Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 TSSK5P-201ENST00000423978 907 ntBASIC16.08■□□□□ 0.16
HLA-DQB2P05538 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.08■□□□□ 0.16
HLA-DQB2P05538 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQB2P05538 AC090616.6-203ENST00000579186 1945 ntBASIC16.07■□□□□ 0.16
HLA-DQB2P05538 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 AC055876.3-201ENST00000431496 288 ntBASIC16.07■□□□□ 0.16
HLA-DQB2P05538 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 AC138649.4-201ENST00000612222 287 ntBASIC16.07■□□□□ 0.16
HLA-DQB2P05538 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 AC087499.5-201ENST00000452760 1342 ntBASIC16.07■□□□□ 0.16
HLA-DQB2P05538 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 Z97205.2-201ENST00000564697 1639 ntBASIC16.07■□□□□ 0.16
HLA-DQB2P05538 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQB2P05538 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DQB2P05538 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DQB2P05538 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DQB2P05538 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
HLA-DQB2P05538 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
HLA-DQB2P05538 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DQB2P05538 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DQB2P05538 SSR4P1-203ENST00000599569 2260 ntBASIC16.06■□□□□ 0.16
HLA-DQB2P05538 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DQB2P05538 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DQB2P05538 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DQB2P05538 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DQB2P05538 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DQB2P05538 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
HLA-DQB2P05538 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DQB2P05538 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
HLA-DQB2P05538 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DQB2P05538 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DQB2P05538 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.06■□□□□ 0.16
HLA-DQB2P05538 AC241585.1-201ENST00000433527 519 ntBASIC16.06■□□□□ 0.16
HLA-DQB2P05538 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.06■□□□□ 0.16
HLA-DQB2P05538 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DQB2P05538 ORC5-208ENST00000626700 344 ntTSL 3 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms