Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC13.59□□□□□ -0.23
SDCBPO00560 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
SDCBPO00560 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
SDCBPO00560 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
SDCBPO00560 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC13.59□□□□□ -0.23
SDCBPO00560 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC13.59□□□□□ -0.23
SDCBPO00560 AL590627.1-203ENST00000421194 1026 ntBASIC13.59□□□□□ -0.23
SDCBPO00560 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC13.59□□□□□ -0.23
SDCBPO00560 NMU-203ENST00000507338 658 ntTSL 3 BASIC13.59□□□□□ -0.23
SDCBPO00560 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC13.59□□□□□ -0.23
SDCBPO00560 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
SDCBPO00560 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 MAL2-202ENST00000531508 892 ntTSL 3 BASIC13.59□□□□□ -0.23
SDCBPO00560 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC13.59□□□□□ -0.23
SDCBPO00560 AC018845.2-201ENST00000568326 409 ntBASIC13.59□□□□□ -0.23
SDCBPO00560 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC13.59□□□□□ -0.23
SDCBPO00560 AL121894.2-201ENST00000602977 491 ntBASIC13.59□□□□□ -0.23
SDCBPO00560 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 AQP6-205ENST00000618286 829 ntTSL 5 BASIC13.59□□□□□ -0.23
SDCBPO00560 AC004877.2-201ENST00000623941 599 ntBASIC13.59□□□□□ -0.23
SDCBPO00560 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC13.59□□□□□ -0.23
SDCBPO00560 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC13.59□□□□□ -0.23
SDCBPO00560 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
SDCBPO00560 IL9RP2-201ENST00000423948 1312 ntBASIC13.59□□□□□ -0.23
SDCBPO00560 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
SDCBPO00560 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
SDCBPO00560 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC13.59□□□□□ -0.23
SDCBPO00560 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC13.59□□□□□ -0.23
SDCBPO00560 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
SDCBPO00560 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.23
SDCBPO00560 ZNF259P1-201ENST00000407656 1365 ntBASIC13.58□□□□□ -0.23
SDCBPO00560 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
SDCBPO00560 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
SDCBPO00560 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
SDCBPO00560 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
SDCBPO00560 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC13.58□□□□□ -0.23
SDCBPO00560 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
SDCBPO00560 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
SDCBPO00560 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
SDCBPO00560 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
SDCBPO00560 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.23
SDCBPO00560 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
SDCBPO00560 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SDCBPO00560 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
SDCBPO00560 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC13.58□□□□□ -0.24
SDCBPO00560 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC13.58□□□□□ -0.24
SDCBPO00560 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC13.58□□□□□ -0.24
SDCBPO00560 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SDCBPO00560 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SDCBPO00560 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SDCBPO00560 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SDCBPO00560 AC025580.3-201ENST00000617932 1424 ntBASIC13.58□□□□□ -0.24
SDCBPO00560 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC13.58□□□□□ -0.24
SDCBPO00560 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC13.58□□□□□ -0.24
SDCBPO00560 FALEC-201ENST00000416894 566 ntTSL 3 BASIC13.58□□□□□ -0.24
SDCBPO00560 HS6ST1P1-201ENST00000481504 1234 ntBASIC13.58□□□□□ -0.24
SDCBPO00560 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC13.58□□□□□ -0.24
SDCBPO00560 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC13.58□□□□□ -0.24
SDCBPO00560 AC034105.1-201ENST00000563488 319 ntBASIC13.58□□□□□ -0.24
SDCBPO00560 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC13.58□□□□□ -0.24
SDCBPO00560 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC13.58□□□□□ -0.24
SDCBPO00560 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC13.58□□□□□ -0.24
SDCBPO00560 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
SDCBPO00560 MED16-214ENST00000617672 554 ntTSL 5 BASIC13.58□□□□□ -0.24
SDCBPO00560 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SDCBPO00560 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
SDCBPO00560 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SDCBPO00560 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
SDCBPO00560 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC13.58□□□□□ -0.24
SDCBPO00560 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC13.58□□□□□ -0.24
SDCBPO00560 AC091951.1-201ENST00000512854 2465 ntBASIC13.58□□□□□ -0.24
SDCBPO00560 AC007686.3-201ENST00000619017 3487 ntBASIC13.58□□□□□ -0.24
SDCBPO00560 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC13.58□□□□□ -0.24
SDCBPO00560 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC13.58□□□□□ -0.24
SDCBPO00560 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SDCBPO00560 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC13.58□□□□□ -0.24
SDCBPO00560 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SDCBPO00560 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC13.58□□□□□ -0.24
SDCBPO00560 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC13.58□□□□□ -0.24
SDCBPO00560 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC13.58□□□□□ -0.24
SDCBPO00560 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC13.58□□□□□ -0.24
SDCBPO00560 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SDCBPO00560 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
SDCBPO00560 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SDCBPO00560 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SDCBPO00560 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC13.58□□□□□ -0.24
SDCBPO00560 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms