Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
PDLIM1O00151 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM1O00151 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC15.23■□□□□ 0.03
PDLIM1O00151 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM1O00151 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC15.23■□□□□ 0.03
PDLIM1O00151 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC15.23■□□□□ 0.03
PDLIM1O00151 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM1O00151 AC093909.1-201ENST00000504731 1122 ntBASIC15.23■□□□□ 0.03
PDLIM1O00151 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC15.23■□□□□ 0.03
PDLIM1O00151 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC15.23■□□□□ 0.03
PDLIM1O00151 LITAF-211ENST00000572255 516 ntTSL 4 BASIC15.23■□□□□ 0.03
PDLIM1O00151 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
PDLIM1O00151 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC15.23■□□□□ 0.03
PDLIM1O00151 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC15.23■□□□□ 0.03
PDLIM1O00151 BX640515.1-201ENST00000617215 977 ntBASIC15.23■□□□□ 0.03
PDLIM1O00151 AC116407.3-201ENST00000623905 1129 ntBASIC15.23■□□□□ 0.03
PDLIM1O00151 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC15.23■□□□□ 0.03
PDLIM1O00151 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM1O00151 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM1O00151 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM1O00151 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.23■□□□□ 0.03
PDLIM1O00151 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM1O00151 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM1O00151 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
PDLIM1O00151 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.23■□□□□ 0.03
PDLIM1O00151 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM1O00151 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.23■□□□□ 0.03
PDLIM1O00151 AC006504.5-208ENST00000588784 2401 ntBASIC15.23■□□□□ 0.03
PDLIM1O00151 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
PDLIM1O00151 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM1O00151 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM1O00151 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PDLIM1O00151 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM1O00151 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM1O00151 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM1O00151 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM1O00151 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM1O00151 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM1O00151 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.22■□□□□ 0.03
PDLIM1O00151 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC15.22■□□□□ 0.03
PDLIM1O00151 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM1O00151 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM1O00151 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM1O00151 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM1O00151 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
PDLIM1O00151 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM1O00151 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM1O00151 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM1O00151 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC15.22■□□□□ 0.03
PDLIM1O00151 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
PDLIM1O00151 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC15.22■□□□□ 0.03
PDLIM1O00151 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC15.22■□□□□ 0.03
PDLIM1O00151 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC15.22■□□□□ 0.03
PDLIM1O00151 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC15.22■□□□□ 0.03
PDLIM1O00151 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
PDLIM1O00151 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.22■□□□□ 0.03
PDLIM1O00151 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM1O00151 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.22■□□□□ 0.03
PDLIM1O00151 AL161772.1-201ENST00000610494 4412 ntBASIC15.22■□□□□ 0.03
PDLIM1O00151 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM1O00151 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
PDLIM1O00151 AC005622.1-201ENST00000636801 1703 ntBASIC15.22■□□□□ 0.03
PDLIM1O00151 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.22■□□□□ 0.03
PDLIM1O00151 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC15.22■□□□□ 0.03
PDLIM1O00151 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM1O00151 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.22■□□□□ 0.03
PDLIM1O00151 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM1O00151 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.22■□□□□ 0.03
PDLIM1O00151 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM1O00151 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM1O00151 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM1O00151 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.22■□□□□ 0.03
PDLIM1O00151 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM1O00151 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.22■□□□□ 0.03
PDLIM1O00151 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
PDLIM1O00151 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PDLIM1O00151 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC15.21■□□□□ 0.03
PDLIM1O00151 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
PDLIM1O00151 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PDLIM1O00151 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PDLIM1O00151 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
PDLIM1O00151 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
PDLIM1O00151 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PDLIM1O00151 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.21■□□□□ 0.03
PDLIM1O00151 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC15.21■□□□□ 0.03
PDLIM1O00151 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PDLIM1O00151 AC008677.1-201ENST00000519230 1561 ntBASIC15.21■□□□□ 0.03
PDLIM1O00151 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
PDLIM1O00151 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PDLIM1O00151 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PDLIM1O00151 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC15.21■□□□□ 0.03
PDLIM1O00151 INIP-202ENST00000374236 874 ntTSL 2 BASIC15.21■□□□□ 0.03
PDLIM1O00151 CENPM-204ENST00000402420 688 ntTSL 5 BASIC15.21■□□□□ 0.03
PDLIM1O00151 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC15.21■□□□□ 0.03
PDLIM1O00151 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC15.21■□□□□ 0.03
PDLIM1O00151 IGHV3-22-201ENST00000520721 359 ntBASIC15.21■□□□□ 0.03
PDLIM1O00151 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC15.21■□□□□ 0.03
PDLIM1O00151 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC15.21■□□□□ 0.03
PDLIM1O00151 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC15.21■□□□□ 0.03
PDLIM1O00151 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms