Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 ARTN-206ENST00000472435 402 ntTSL 3 BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 BET1L-206ENST00000486280 665 ntTSL 3 BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 AC022616.7-201ENST00000525383 220 ntBASIC15.09■□□□□ 0.01
AP4S1Q9Y587 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 PNN-202ENST00000553331 656 ntTSL 3 BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 AC074051.2-201ENST00000565115 352 ntBASIC15.09■□□□□ 0.01
AP4S1Q9Y587 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 AC092329.2-201ENST00000598402 547 ntBASIC15.09■□□□□ 0.01
AP4S1Q9Y587 AL365330.1-201ENST00000607459 531 ntBASIC15.09■□□□□ 0.01
AP4S1Q9Y587 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 AC004706.3-202ENST00000621574 984 ntBASIC15.09■□□□□ 0.01
AP4S1Q9Y587 AC097493.4-201ENST00000641197 219 ntBASIC15.09■□□□□ 0.01
AP4S1Q9Y587 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 PPP1R26P4-201ENST00000619065 3527 ntBASIC15.09■□□□□ 0.01
AP4S1Q9Y587 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
AP4S1Q9Y587 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0.01
AP4S1Q9Y587 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
AP4S1Q9Y587 AC148477.4-201ENST00000613430 1793 ntBASIC15.08■□□□□ 0.01
AP4S1Q9Y587 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
AP4S1Q9Y587 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
AP4S1Q9Y587 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.08■□□□□ 0.01
AP4S1Q9Y587 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0
AP4S1Q9Y587 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.08■□□□□ 0
AP4S1Q9Y587 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.08■□□□□ 0
AP4S1Q9Y587 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC15.08■□□□□ 0
AP4S1Q9Y587 AL137784.3-201ENST00000623858 2288 ntBASIC15.08■□□□□ 0
AP4S1Q9Y587 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC15.08■□□□□ 0
AP4S1Q9Y587 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC15.08■□□□□ 0
AP4S1Q9Y587 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC15.08■□□□□ 0
AP4S1Q9Y587 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
AP4S1Q9Y587 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC15.08■□□□□ 0
AP4S1Q9Y587 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
AP4S1Q9Y587 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
AP4S1Q9Y587 AC104076.2-201ENST00000448912 469 ntBASIC15.08■□□□□ 0
AP4S1Q9Y587 TSSC2-201ENST00000450217 709 ntBASIC15.08■□□□□ 0
AP4S1Q9Y587 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC15.08■□□□□ 0
AP4S1Q9Y587 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC15.08■□□□□ 0
AP4S1Q9Y587 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC15.08■□□□□ 0
AP4S1Q9Y587 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC15.08■□□□□ 0
AP4S1Q9Y587 AC021097.1-201ENST00000607902 574 ntBASIC15.08■□□□□ 0
AP4S1Q9Y587 AP001269.4-201ENST00000609611 512 ntBASIC15.08■□□□□ 0
AP4S1Q9Y587 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC15.08■□□□□ 0
AP4S1Q9Y587 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.08■□□□□ 0
AP4S1Q9Y587 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC15.08■□□□□ 0
AP4S1Q9Y587 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.08■□□□□ 0
AP4S1Q9Y587 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.08■□□□□ 0
AP4S1Q9Y587 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
AP4S1Q9Y587 AC117489.1-201ENST00000625169 3217 ntBASIC15.08■□□□□ 0
AP4S1Q9Y587 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
AP4S1Q9Y587 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.08■□□□□ 0
AP4S1Q9Y587 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
AP4S1Q9Y587 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
AP4S1Q9Y587 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
AP4S1Q9Y587 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
AP4S1Q9Y587 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
AP4S1Q9Y587 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC15.08■□□□□ 0
AP4S1Q9Y587 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
AP4S1Q9Y587 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.07■□□□□ 0
AP4S1Q9Y587 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
AP4S1Q9Y587 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
AP4S1Q9Y587 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC15.07■□□□□ 0
AP4S1Q9Y587 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.07■□□□□ 0
AP4S1Q9Y587 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
AP4S1Q9Y587 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC15.07■□□□□ 0
AP4S1Q9Y587 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC15.07■□□□□ 0
AP4S1Q9Y587 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
AP4S1Q9Y587 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
AP4S1Q9Y587 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.07■□□□□ 0
AP4S1Q9Y587 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.07■□□□□ 0
AP4S1Q9Y587 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
AP4S1Q9Y587 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
AP4S1Q9Y587 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
AP4S1Q9Y587 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC15.07■□□□□ 0
AP4S1Q9Y587 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.07■□□□□ 0
AP4S1Q9Y587 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
AP4S1Q9Y587 FXN-203ENST00000396366 922 ntTSL 2 BASIC15.07■□□□□ 0
AP4S1Q9Y587 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
AP4S1Q9Y587 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.07■□□□□ 0
AP4S1Q9Y587 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.07■□□□□ 0
AP4S1Q9Y587 LINC00265-3P-201ENST00000447588 903 ntBASIC15.07■□□□□ 0
AP4S1Q9Y587 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.07■□□□□ 0
AP4S1Q9Y587 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.07■□□□□ 0
AP4S1Q9Y587 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
AP4S1Q9Y587 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms