Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.73■□□□□ 0.27
CDH9Q9ULB4 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC16.73■□□□□ 0.27
CDH9Q9ULB4 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH9Q9ULB4 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH9Q9ULB4 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CDH9Q9ULB4 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH9Q9ULB4 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
CDH9Q9ULB4 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDH9Q9ULB4 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CDH9Q9ULB4 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.73■□□□□ 0.27
CDH9Q9ULB4 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 AC010491.1-201ENST00000563101 2797 ntBASIC16.72■□□□□ 0.27
CDH9Q9ULB4 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 AC098614.1-201ENST00000368528 745 ntBASIC16.72■□□□□ 0.27
CDH9Q9ULB4 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 GRAP-202ENST00000395635 834 ntTSL 2 BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 CLK3P2-201ENST00000427566 1453 ntBASIC16.72■□□□□ 0.27
CDH9Q9ULB4 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CDH9Q9ULB4 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 AC098850.1-201ENST00000419919 790 ntBASIC16.71■□□□□ 0.27
CDH9Q9ULB4 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 WASH4P-201ENST00000564273 1246 ntBASIC16.71■□□□□ 0.27
CDH9Q9ULB4 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 TMEM261P1-201ENST00000604899 340 ntBASIC16.71■□□□□ 0.27
CDH9Q9ULB4 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CDH9Q9ULB4 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms