Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 ZEB1-AS1-208ENST00000607166 2503 ntBASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 AL590627.1-203ENST00000421194 1026 ntBASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 MED15P5-201ENST00000423150 992 ntBASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 FAM58CP-201ENST00000435741 640 ntBASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 KRT8P48-201ENST00000515599 1220 ntBASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 ING5-213ENST00000636051 4199 ntTSL 5 BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 FDX1P1-201ENST00000449115 551 ntBASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 KRT8P23-201ENST00000560090 1207 ntBASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 AC026120.1-201ENST00000611536 926 ntBASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 BX640515.1-201ENST00000617215 977 ntBASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 AC084121.4-201ENST00000641598 221 ntBASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 AF228730.8-201ENST00000642140 221 ntBASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 LINC00528-201ENST00000600723 2160 ntBASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 AC013726.1-201ENST00000563747 2285 ntBASIC17.35■□□□□ 0.37
LIMA1Q9UHB6 GSN-203ENST00000373808 2664 ntTSL 2 BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 AC136604.1-201ENST00000418535 575 ntBASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 AC079140.1-201ENST00000508039 487 ntBASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIMA1Q9UHB6 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms