Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.69■□□□□ 0.1
MKS1Q9NXB0 AC099522.2-201ENST00000607001 744 ntBASIC15.69■□□□□ 0.1
MKS1Q9NXB0 AL031008.1-201ENST00000619963 541 ntBASIC15.69■□□□□ 0.1
MKS1Q9NXB0 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MKS1Q9NXB0 WASH3P-207ENST00000560956 1394 ntBASIC15.69■□□□□ 0.1
MKS1Q9NXB0 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.69■□□□□ 0.1
MKS1Q9NXB0 FO538757.1-201ENST00000623083 1397 ntBASIC15.69■□□□□ 0.1
MKS1Q9NXB0 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.69■□□□□ 0.1
MKS1Q9NXB0 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
MKS1Q9NXB0 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MKS1Q9NXB0 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MKS1Q9NXB0 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC15.69■□□□□ 0.1
MKS1Q9NXB0 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
MKS1Q9NXB0 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MKS1Q9NXB0 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.69■□□□□ 0.1
MKS1Q9NXB0 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
MKS1Q9NXB0 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
MKS1Q9NXB0 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
MKS1Q9NXB0 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
MKS1Q9NXB0 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MKS1Q9NXB0 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MKS1Q9NXB0 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 AC142381.1-201ENST00000426099 345 ntBASIC15.68■□□□□ 0.1
MKS1Q9NXB0 AC079781.3-201ENST00000449110 356 ntBASIC15.68■□□□□ 0.1
MKS1Q9NXB0 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 RARRES2P8-201ENST00000566335 367 ntBASIC15.68■□□□□ 0.1
MKS1Q9NXB0 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 CALM3-211ENST00000598871 561 ntTSL 4 BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
MKS1Q9NXB0 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 AC005912.2-201ENST00000619492 2400 ntBASIC15.67■□□□□ 0.1
MKS1Q9NXB0 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 AC136604.1-201ENST00000418535 575 ntBASIC15.67■□□□□ 0.1
MKS1Q9NXB0 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 RNA5SP419-201ENST00000515908 135 ntBASIC15.67■□□□□ 0.1
MKS1Q9NXB0 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 LITAF-211ENST00000572255 516 ntTSL 4 BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 AP002472.1-201ENST00000577490 586 ntBASIC15.67■□□□□ 0.1
MKS1Q9NXB0 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 AL691432.3-201ENST00000621860 400 ntBASIC15.67■□□□□ 0.1
MKS1Q9NXB0 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.67■□□□□ 0.1
MKS1Q9NXB0 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms