Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
POLR2J3Q9H1A7 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
POLR2J3Q9H1A7 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
POLR2J3Q9H1A7 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
POLR2J3Q9H1A7 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14.76□□□□□ -0.05
POLR2J3Q9H1A7 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 OR2I1P-209ENST00000641730 5365 ntBASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 PAM16-215ENST00000577031 548 ntTSL 4 BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 SPTSSB-204ENST00000617024 1292 ntBASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC14.75□□□□□ -0.05
POLR2J3Q9H1A7 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 AL591424.1-201ENST00000442569 1213 ntBASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 AC018845.2-201ENST00000568326 409 ntBASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 AC061975.2-201ENST00000581722 295 ntBASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
POLR2J3Q9H1A7 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms