Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC18.17■□□□□ 0.5
USP28Q96RU2 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP28Q96RU2 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP28Q96RU2 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC18.17■□□□□ 0.5
USP28Q96RU2 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP28Q96RU2 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP28Q96RU2 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
USP28Q96RU2 CD81-202ENST00000381036 880 ntTSL 3 BASIC18.17■□□□□ 0.5
USP28Q96RU2 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP28Q96RU2 AZGP1P1-201ENST00000411909 902 ntBASIC18.17■□□□□ 0.5
USP28Q96RU2 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC18.17■□□□□ 0.5
USP28Q96RU2 FAM58DP-201ENST00000428076 619 ntBASIC18.17■□□□□ 0.5
USP28Q96RU2 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.17■□□□□ 0.5
USP28Q96RU2 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC18.17■□□□□ 0.5
USP28Q96RU2 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC18.17■□□□□ 0.5
USP28Q96RU2 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC18.17■□□□□ 0.5
USP28Q96RU2 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.17■□□□□ 0.5
USP28Q96RU2 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
USP28Q96RU2 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC18.17■□□□□ 0.5
USP28Q96RU2 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC18.17■□□□□ 0.5
USP28Q96RU2 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC18.17■□□□□ 0.5
USP28Q96RU2 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP28Q96RU2 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP28Q96RU2 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP28Q96RU2 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP28Q96RU2 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP28Q96RU2 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP28Q96RU2 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP28Q96RU2 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
USP28Q96RU2 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
USP28Q96RU2 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
USP28Q96RU2 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
USP28Q96RU2 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC18.17■□□□□ 0.5
USP28Q96RU2 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC18.17■□□□□ 0.5
USP28Q96RU2 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP28Q96RU2 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP28Q96RU2 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
USP28Q96RU2 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC18.17■□□□□ 0.5
USP28Q96RU2 KRT8P44-201ENST00000441609 1350 ntBASIC18.17■□□□□ 0.5
USP28Q96RU2 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP28Q96RU2 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC18.16■□□□□ 0.5
USP28Q96RU2 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
USP28Q96RU2 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
USP28Q96RU2 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC18.16■□□□□ 0.5
USP28Q96RU2 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP28Q96RU2 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
USP28Q96RU2 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC18.16■□□□□ 0.5
USP28Q96RU2 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP28Q96RU2 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP28Q96RU2 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
USP28Q96RU2 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP28Q96RU2 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
USP28Q96RU2 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP28Q96RU2 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC18.16■□□□□ 0.5
USP28Q96RU2 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
USP28Q96RU2 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC18.16■□□□□ 0.5
USP28Q96RU2 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
USP28Q96RU2 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP28Q96RU2 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC18.16■□□□□ 0.5
USP28Q96RU2 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP28Q96RU2 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
USP28Q96RU2 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP28Q96RU2 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
USP28Q96RU2 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC18.16■□□□□ 0.5
USP28Q96RU2 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP28Q96RU2 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.16■□□□□ 0.5
USP28Q96RU2 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
USP28Q96RU2 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
USP28Q96RU2 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC18.16■□□□□ 0.5
USP28Q96RU2 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC18.16■□□□□ 0.5
USP28Q96RU2 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.16■□□□□ 0.5
USP28Q96RU2 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
USP28Q96RU2 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.16■□□□□ 0.5
USP28Q96RU2 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP28Q96RU2 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP28Q96RU2 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC18.16■□□□□ 0.5
USP28Q96RU2 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP28Q96RU2 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
USP28Q96RU2 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP28Q96RU2 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP28Q96RU2 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC18.16■□□□□ 0.5
USP28Q96RU2 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP28Q96RU2 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP28Q96RU2 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC18.16■□□□□ 0.5
USP28Q96RU2 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
USP28Q96RU2 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
USP28Q96RU2 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC18.15■□□□□ 0.5
USP28Q96RU2 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
USP28Q96RU2 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP28Q96RU2 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
USP28Q96RU2 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC18.15■□□□□ 0.5
USP28Q96RU2 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP28Q96RU2 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC18.15■□□□□ 0.5
USP28Q96RU2 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP28Q96RU2 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
USP28Q96RU2 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
USP28Q96RU2 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
USP28Q96RU2 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
USP28Q96RU2 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
USP28Q96RU2 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms