Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC15.74■□□□□ 0.11
TTC28Q96AY4 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TTC28Q96AY4 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TTC28Q96AY4 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.74■□□□□ 0.11
TTC28Q96AY4 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC15.73■□□□□ 0.11
TTC28Q96AY4 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TTC28Q96AY4 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TTC28Q96AY4 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
TTC28Q96AY4 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC15.73■□□□□ 0.11
TTC28Q96AY4 AC023906.1-201ENST00000486386 453 ntBASIC15.73■□□□□ 0.11
TTC28Q96AY4 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC15.73■□□□□ 0.11
TTC28Q96AY4 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.73■□□□□ 0.11
TTC28Q96AY4 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TTC28Q96AY4 STUB1-204ENST00000564370 875 ntTSL 2 BASIC15.73■□□□□ 0.11
TTC28Q96AY4 AC093752.3-201ENST00000567343 901 ntBASIC15.73■□□□□ 0.11
TTC28Q96AY4 AC026803.1-201ENST00000569130 274 ntBASIC15.73■□□□□ 0.11
TTC28Q96AY4 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC15.73■□□□□ 0.11
TTC28Q96AY4 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TTC28Q96AY4 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TTC28Q96AY4 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
TTC28Q96AY4 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TTC28Q96AY4 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
TTC28Q96AY4 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TTC28Q96AY4 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
TTC28Q96AY4 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
TTC28Q96AY4 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TTC28Q96AY4 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TTC28Q96AY4 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
TTC28Q96AY4 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC15.73■□□□□ 0.11
TTC28Q96AY4 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
TTC28Q96AY4 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TTC28Q96AY4 OR2K2-202ENST00000374428 1038 ntBASIC15.73■□□□□ 0.11
TTC28Q96AY4 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TTC28Q96AY4 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC15.73■□□□□ 0.11
TTC28Q96AY4 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC15.73■□□□□ 0.11
TTC28Q96AY4 AC108724.1-201ENST00000481669 352 ntBASIC15.73■□□□□ 0.11
TTC28Q96AY4 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC15.73■□□□□ 0.11
TTC28Q96AY4 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC15.73■□□□□ 0.11
TTC28Q96AY4 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC15.73■□□□□ 0.11
TTC28Q96AY4 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC15.73■□□□□ 0.11
TTC28Q96AY4 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TTC28Q96AY4 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TTC28Q96AY4 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC15.73■□□□□ 0.11
TTC28Q96AY4 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.73■□□□□ 0.11
TTC28Q96AY4 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
TTC28Q96AY4 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.73■□□□□ 0.11
TTC28Q96AY4 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC15.73■□□□□ 0.11
TTC28Q96AY4 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
TTC28Q96AY4 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.73■□□□□ 0.11
TTC28Q96AY4 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TTC28Q96AY4 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
TTC28Q96AY4 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC15.72■□□□□ 0.11
TTC28Q96AY4 EML3-217ENST00000531557 2509 ntTSL 5 BASIC15.72■□□□□ 0.11
TTC28Q96AY4 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TTC28Q96AY4 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC15.72■□□□□ 0.11
TTC28Q96AY4 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC15.72■□□□□ 0.11
TTC28Q96AY4 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC15.72■□□□□ 0.11
TTC28Q96AY4 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TTC28Q96AY4 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
TTC28Q96AY4 FAM58BP-201ENST00000439056 645 ntBASIC15.72■□□□□ 0.11
TTC28Q96AY4 CHMP1AP1-201ENST00000445563 662 ntBASIC15.72■□□□□ 0.11
TTC28Q96AY4 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC15.72■□□□□ 0.11
TTC28Q96AY4 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.72■□□□□ 0.11
TTC28Q96AY4 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC15.72■□□□□ 0.11
TTC28Q96AY4 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC15.72■□□□□ 0.11
TTC28Q96AY4 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TTC28Q96AY4 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TTC28Q96AY4 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
TTC28Q96AY4 LINC01815-202ENST00000641468 1409 ntBASIC15.72■□□□□ 0.11
TTC28Q96AY4 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
TTC28Q96AY4 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
TTC28Q96AY4 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC15.72■□□□□ 0.11
TTC28Q96AY4 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
TTC28Q96AY4 AC015909.3-201ENST00000572855 1794 ntBASIC15.72■□□□□ 0.11
TTC28Q96AY4 AC148477.4-201ENST00000613430 1793 ntBASIC15.72■□□□□ 0.11
TTC28Q96AY4 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TTC28Q96AY4 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TTC28Q96AY4 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TTC28Q96AY4 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC15.72■□□□□ 0.11
TTC28Q96AY4 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.72■□□□□ 0.11
TTC28Q96AY4 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC15.72■□□□□ 0.11
TTC28Q96AY4 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TTC28Q96AY4 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC15.72■□□□□ 0.11
TTC28Q96AY4 CTBP2P6-201ENST00000526402 1229 ntBASIC15.72■□□□□ 0.11
TTC28Q96AY4 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TTC28Q96AY4 AC008805.1-201ENST00000590892 364 ntBASIC15.72■□□□□ 0.11
TTC28Q96AY4 RPS5-204ENST00000598098 536 ntTSL 2 BASIC15.72■□□□□ 0.11
TTC28Q96AY4 AC012073.1-201ENST00000606114 1108 ntBASIC15.72■□□□□ 0.11
TTC28Q96AY4 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
TTC28Q96AY4 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TTC28Q96AY4 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC15.72■□□□□ 0.11
TTC28Q96AY4 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TTC28Q96AY4 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC15.72■□□□□ 0.11
TTC28Q96AY4 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC15.72■□□□□ 0.11
TTC28Q96AY4 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TTC28Q96AY4 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TTC28Q96AY4 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.11
TTC28Q96AY4 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TTC28Q96AY4 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC15.71■□□□□ 0.11
TTC28Q96AY4 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms