Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
ATG4AQ8WYN0 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
ATG4AQ8WYN0 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
ATG4AQ8WYN0 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
ATG4AQ8WYN0 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
ATG4AQ8WYN0 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
ATG4AQ8WYN0 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.52■□□□□ 0.23
ATG4AQ8WYN0 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC16.52■□□□□ 0.23
ATG4AQ8WYN0 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
ATG4AQ8WYN0 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
ATG4AQ8WYN0 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
ATG4AQ8WYN0 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 AKAP8P1-201ENST00000434743 1349 ntBASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 CICP24-201ENST00000605464 2705 ntBASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 ADH5P3-201ENST00000433842 1137 ntBASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 FAM58CP-201ENST00000435741 640 ntBASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 AC106730.1-201ENST00000566722 1090 ntBASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 AC127383.1-201ENST00000444697 1800 ntBASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 MST1L-201ENST00000442552 2185 ntBASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ATG4AQ8WYN0 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 RPS8P6-201ENST00000426177 609 ntBASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 BX640515.1-201ENST00000617215 977 ntBASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
ATG4AQ8WYN0 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 ZEB1-AS1-208ENST00000607166 2503 ntBASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms