Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC15.43■□□□□ 0.06
LMX1AQ8TE12 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 HNRNPA1P48-201ENST00000562726 1377 ntBASIC15.42■□□□□ 0.06
LMX1AQ8TE12 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 SOCS2P1-201ENST00000417727 557 ntBASIC15.42■□□□□ 0.06
LMX1AQ8TE12 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 VDAC1P7-201ENST00000462417 847 ntBASIC15.42■□□□□ 0.06
LMX1AQ8TE12 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 AC104989.1-201ENST00000519711 778 ntBASIC15.42■□□□□ 0.06
LMX1AQ8TE12 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 MIR5189-201ENST00000577370 114 ntBASIC15.42■□□□□ 0.06
LMX1AQ8TE12 PFAS-212ENST00000625942 396 ntTSL 5 BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LMX1AQ8TE12 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 AC018892.3-201ENST00000623986 2499 ntBASIC15.41■□□□□ 0.06
LMX1AQ8TE12 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 MIR648-201ENST00000385046 94 ntBASIC15.41■□□□□ 0.06
LMX1AQ8TE12 C1QBPP1-201ENST00000400117 770 ntBASIC15.41■□□□□ 0.06
LMX1AQ8TE12 MPV17-208ENST00000405076 603 ntTSL 5 BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 ACTG1P3-201ENST00000431775 1114 ntBASIC15.41■□□□□ 0.06
LMX1AQ8TE12 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 AC097359.3-201ENST00000603982 1210 ntBASIC15.41■□□□□ 0.06
LMX1AQ8TE12 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 MIR6799-201ENST00000620297 69 ntBASIC15.41■□□□□ 0.06
LMX1AQ8TE12 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LMX1AQ8TE12 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LMX1AQ8TE12 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms