Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC20.64■□□□□ 0.9
USP54Q70EL1 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
USP54Q70EL1 AC020914.3-201ENST00000594712 304 ntBASIC20.64■□□□□ 0.9
USP54Q70EL1 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC20.64■□□□□ 0.9
USP54Q70EL1 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
USP54Q70EL1 NKILA-202ENST00000614771 2598 ntBASIC20.64■□□□□ 0.9
USP54Q70EL1 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP54Q70EL1 CLUHP2-201ENST00000426660 1303 ntBASIC20.64■□□□□ 0.89
USP54Q70EL1 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC20.64■□□□□ 0.89
USP54Q70EL1 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP54Q70EL1 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC20.64■□□□□ 0.89
USP54Q70EL1 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP54Q70EL1 ACE-203ENST00000413513 2237 ntTSL 2 BASIC20.64■□□□□ 0.89
USP54Q70EL1 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP54Q70EL1 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC20.64■□□□□ 0.89
USP54Q70EL1 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
USP54Q70EL1 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC20.64■□□□□ 0.89
USP54Q70EL1 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
USP54Q70EL1 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP54Q70EL1 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
USP54Q70EL1 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP54Q70EL1 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP54Q70EL1 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP54Q70EL1 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP54Q70EL1 SMS-201ENST00000379404 1174 ntTSL 3 BASIC20.64■□□□□ 0.89
USP54Q70EL1 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC20.64■□□□□ 0.89
USP54Q70EL1 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC20.64■□□□□ 0.89
USP54Q70EL1 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC20.64■□□□□ 0.89
USP54Q70EL1 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC20.64■□□□□ 0.89
USP54Q70EL1 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC20.64■□□□□ 0.89
USP54Q70EL1 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC20.64■□□□□ 0.89
USP54Q70EL1 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC20.64■□□□□ 0.89
USP54Q70EL1 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
USP54Q70EL1 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC20.63■□□□□ 0.89
USP54Q70EL1 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP54Q70EL1 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP54Q70EL1 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP54Q70EL1 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP54Q70EL1 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP54Q70EL1 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP54Q70EL1 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
USP54Q70EL1 REXO1L4P-201ENST00000605109 1937 ntBASIC20.63■□□□□ 0.89
USP54Q70EL1 AC009090.5-201ENST00000624886 2285 ntBASIC20.63■□□□□ 0.89
USP54Q70EL1 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP54Q70EL1 AC092364.2-201ENST00000596710 2692 ntBASIC20.63■□□□□ 0.89
USP54Q70EL1 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
USP54Q70EL1 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
USP54Q70EL1 RPS15-201ENST00000233609 534 ntTSL 2 BASIC20.63■□□□□ 0.89
USP54Q70EL1 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
USP54Q70EL1 CHMP1AP1-201ENST00000445563 662 ntBASIC20.63■□□□□ 0.89
USP54Q70EL1 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC20.63■□□□□ 0.89
USP54Q70EL1 COX5BP1-201ENST00000507622 393 ntBASIC20.63■□□□□ 0.89
USP54Q70EL1 AC044849.1-201ENST00000519737 1188 ntBASIC20.63■□□□□ 0.89
USP54Q70EL1 AP001258.2-201ENST00000529891 490 ntBASIC20.63■□□□□ 0.89
USP54Q70EL1 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC20.63■□□□□ 0.89
USP54Q70EL1 RPS15-205ENST00000586686 562 ntTSL 5 BASIC20.63■□□□□ 0.89
USP54Q70EL1 RPS15-208ENST00000591804 711 ntTSL 5 BASIC20.63■□□□□ 0.89
USP54Q70EL1 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC20.63■□□□□ 0.89
USP54Q70EL1 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP54Q70EL1 OR10B1P-201ENST00000601666 907 ntBASIC20.63■□□□□ 0.89
USP54Q70EL1 AL451050.2-201ENST00000606967 682 ntBASIC20.63■□□□□ 0.89
USP54Q70EL1 AC138649.2-201ENST00000615886 705 ntBASIC20.63■□□□□ 0.89
USP54Q70EL1 AC138466.3-201ENST00000619983 221 ntBASIC20.63■□□□□ 0.89
USP54Q70EL1 AP001002.3-201ENST00000623482 206 ntBASIC20.63■□□□□ 0.89
USP54Q70EL1 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
USP54Q70EL1 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
USP54Q70EL1 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP54Q70EL1 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.62■□□□□ 0.89
USP54Q70EL1 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP54Q70EL1 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP54Q70EL1 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP54Q70EL1 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP54Q70EL1 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC20.62■□□□□ 0.89
USP54Q70EL1 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP54Q70EL1 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC20.62■□□□□ 0.89
USP54Q70EL1 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP54Q70EL1 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP54Q70EL1 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC20.62■□□□□ 0.89
USP54Q70EL1 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC20.62■□□□□ 0.89
USP54Q70EL1 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP54Q70EL1 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP54Q70EL1 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC20.62■□□□□ 0.89
USP54Q70EL1 AC106872.11-201ENST00000605838 421 ntBASIC20.62■□□□□ 0.89
USP54Q70EL1 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC20.62■□□□□ 0.89
USP54Q70EL1 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
USP54Q70EL1 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP54Q70EL1 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP54Q70EL1 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP54Q70EL1 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP54Q70EL1 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP54Q70EL1 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP54Q70EL1 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP54Q70EL1 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP54Q70EL1 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP54Q70EL1 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP54Q70EL1 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
USP54Q70EL1 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
USP54Q70EL1 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP54Q70EL1 AC055811.4-201ENST00000624039 1754 ntBASIC20.61■□□□□ 0.89
USP54Q70EL1 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms