Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC11.14□□□□□ -0.63
PRKDCP78527 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC11.14□□□□□ -0.63
PRKDCP78527 RPS5-204ENST00000598098 536 ntTSL 2 BASIC11.14□□□□□ -0.63
PRKDCP78527 AC084781.1-201ENST00000613737 656 ntBASIC11.14□□□□□ -0.63
PRKDCP78527 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC11.14□□□□□ -0.63
PRKDCP78527 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
PRKDCP78527 E2F3P2-201ENST00000447755 1422 ntBASIC11.14□□□□□ -0.63
PRKDCP78527 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
PRKDCP78527 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC11.14□□□□□ -0.63
PRKDCP78527 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
PRKDCP78527 AC015909.3-201ENST00000572855 1794 ntBASIC11.14□□□□□ -0.63
PRKDCP78527 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
PRKDCP78527 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
PRKDCP78527 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC11.14□□□□□ -0.63
PRKDCP78527 NDUFAB1P1-201ENST00000404262 460 ntBASIC11.14□□□□□ -0.63
PRKDCP78527 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC11.14□□□□□ -0.63
PRKDCP78527 AC021723.1-201ENST00000486306 515 ntBASIC11.14□□□□□ -0.63
PRKDCP78527 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC11.14□□□□□ -0.63
PRKDCP78527 CR383656.3-201ENST00000551315 183 ntBASIC11.14□□□□□ -0.63
PRKDCP78527 PAM16-211ENST00000575848 518 ntTSL 3 BASIC11.14□□□□□ -0.63
PRKDCP78527 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
PRKDCP78527 AC103810.10-201ENST00000606504 343 ntBASIC11.14□□□□□ -0.63
PRKDCP78527 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
PRKDCP78527 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC11.14□□□□□ -0.63
PRKDCP78527 AC018695.7-201ENST00000624587 2492 ntBASIC11.14□□□□□ -0.63
PRKDCP78527 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
PRKDCP78527 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
PRKDCP78527 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC11.14□□□□□ -0.63
PRKDCP78527 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
PRKDCP78527 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
PRKDCP78527 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
PRKDCP78527 ACTBP8-201ENST00000403258 1108 ntBASIC11.14□□□□□ -0.63
PRKDCP78527 KRT17P4-201ENST00000429445 819 ntBASIC11.14□□□□□ -0.63
PRKDCP78527 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
PRKDCP78527 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC11.14□□□□□ -0.63
PRKDCP78527 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC11.14□□□□□ -0.63
PRKDCP78527 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
PRKDCP78527 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
PRKDCP78527 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
PRKDCP78527 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC11.14□□□□□ -0.63
PRKDCP78527 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC11.14□□□□□ -0.63
PRKDCP78527 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
PRKDCP78527 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
PRKDCP78527 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
PRKDCP78527 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC11.13□□□□□ -0.63
PRKDCP78527 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
PRKDCP78527 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
PRKDCP78527 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC11.13□□□□□ -0.63
PRKDCP78527 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC11.13□□□□□ -0.63
PRKDCP78527 AC026803.1-201ENST00000569130 274 ntBASIC11.13□□□□□ -0.63
PRKDCP78527 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC11.13□□□□□ -0.63
PRKDCP78527 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC11.13□□□□□ -0.63
PRKDCP78527 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
PRKDCP78527 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC11.13□□□□□ -0.63
PRKDCP78527 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC11.13□□□□□ -0.63
PRKDCP78527 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
PRKDCP78527 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
PRKDCP78527 AC239868.1-201ENST00000369385 493 ntBASIC11.13□□□□□ -0.63
PRKDCP78527 AL358472.3-201ENST00000608147 415 ntBASIC11.13□□□□□ -0.63
PRKDCP78527 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC11.13□□□□□ -0.63
PRKDCP78527 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
PRKDCP78527 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC11.13□□□□□ -0.63
PRKDCP78527 AC138466.5-201ENST00000624002 808 ntBASIC11.13□□□□□ -0.63
PRKDCP78527 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
PRKDCP78527 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC11.13□□□□□ -0.63
PRKDCP78527 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC11.13□□□□□ -0.63
PRKDCP78527 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC11.13□□□□□ -0.63
PRKDCP78527 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC11.13□□□□□ -0.63
PRKDCP78527 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
PRKDCP78527 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
PRKDCP78527 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
PRKDCP78527 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC11.13□□□□□ -0.63
PRKDCP78527 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
PRKDCP78527 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
PRKDCP78527 HLA-J-204ENST00000495278 958 ntBASIC11.13□□□□□ -0.63
PRKDCP78527 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC11.13□□□□□ -0.63
PRKDCP78527 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC11.13□□□□□ -0.63
PRKDCP78527 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC11.13□□□□□ -0.63
PRKDCP78527 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
PRKDCP78527 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
PRKDCP78527 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
PRKDCP78527 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
PRKDCP78527 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
PRKDCP78527 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC11.13□□□□□ -0.63
PRKDCP78527 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC11.12□□□□□ -0.63
PRKDCP78527 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC11.12□□□□□ -0.63
PRKDCP78527 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
PRKDCP78527 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC11.12□□□□□ -0.63
PRKDCP78527 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC11.12□□□□□ -0.63
PRKDCP78527 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC11.12□□□□□ -0.63
PRKDCP78527 AL135901.1-201ENST00000451812 333 ntBASIC11.12□□□□□ -0.63
PRKDCP78527 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC11.12□□□□□ -0.63
PRKDCP78527 CMC2-224ENST00000630396 481 ntTSL 5 BASIC11.12□□□□□ -0.63
PRKDCP78527 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
PRKDCP78527 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC11.12□□□□□ -0.63
PRKDCP78527 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
PRKDCP78527 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
PRKDCP78527 AC139713.2-201ENST00000641328 2723 ntBASIC11.12□□□□□ -0.63
PRKDCP78527 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC11.12□□□□□ -0.63
PRKDCP78527 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms