Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
CDH11P55287 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CDH11P55287 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CDH11P55287 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CDH11P55287 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CDH11P55287 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CDH11P55287 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.65□□□□□ -0.06
CDH11P55287 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH11P55287 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH11P55287 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CDH11P55287 AL365209.1-201ENST00000624418 6473 ntBASIC14.64□□□□□ -0.07
CDH11P55287 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH11P55287 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH11P55287 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.64□□□□□ -0.07
CDH11P55287 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CDH11P55287 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CDH11P55287 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC14.64□□□□□ -0.07
CDH11P55287 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH11P55287 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CDH11P55287 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH11P55287 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH11P55287 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH11P55287 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH11P55287 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH11P55287 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC14.64□□□□□ -0.07
CDH11P55287 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH11P55287 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH11P55287 LBH-203ENST00000404397 543 ntTSL 4 BASIC14.64□□□□□ -0.07
CDH11P55287 HAUS4P1-201ENST00000406739 1145 ntBASIC14.64□□□□□ -0.07
CDH11P55287 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC14.64□□□□□ -0.07
CDH11P55287 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC14.64□□□□□ -0.07
CDH11P55287 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CDH11P55287 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC14.64□□□□□ -0.07
CDH11P55287 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CDH11P55287 MTRF1LP2-201ENST00000506027 1122 ntBASIC14.64□□□□□ -0.07
CDH11P55287 NMU-203ENST00000507338 658 ntTSL 3 BASIC14.64□□□□□ -0.07
CDH11P55287 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
CDH11P55287 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC14.64□□□□□ -0.07
CDH11P55287 AC112191.1-201ENST00000523689 701 ntBASIC14.64□□□□□ -0.07
CDH11P55287 MMP17-203ENST00000535004 719 ntTSL 3 BASIC14.64□□□□□ -0.07
CDH11P55287 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC14.64□□□□□ -0.07
CDH11P55287 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
CDH11P55287 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC14.64□□□□□ -0.07
CDH11P55287 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
CDH11P55287 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.64□□□□□ -0.07
CDH11P55287 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH11P55287 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH11P55287 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH11P55287 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC14.64□□□□□ -0.07
CDH11P55287 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.64□□□□□ -0.07
CDH11P55287 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH11P55287 KRT18P28-201ENST00000453838 1332 ntBASIC14.64□□□□□ -0.07
CDH11P55287 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.64□□□□□ -0.07
CDH11P55287 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CDH11P55287 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
CDH11P55287 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
CDH11P55287 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH11P55287 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC14.63□□□□□ -0.07
CDH11P55287 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
CDH11P55287 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH11P55287 CICP13-201ENST00000422015 2789 ntBASIC14.63□□□□□ -0.07
CDH11P55287 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
CDH11P55287 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CDH11P55287 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.63□□□□□ -0.07
CDH11P55287 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CDH11P55287 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH11P55287 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH11P55287 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CDH11P55287 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
CDH11P55287 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH11P55287 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.63□□□□□ -0.07
CDH11P55287 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH11P55287 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH11P55287 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH11P55287 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.63□□□□□ -0.07
CDH11P55287 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH11P55287 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CDH11P55287 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC14.63□□□□□ -0.07
CDH11P55287 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH11P55287 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH11P55287 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CDH11P55287 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CDH11P55287 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH11P55287 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH11P55287 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC14.63□□□□□ -0.07
CDH11P55287 FALEC-201ENST00000416894 566 ntTSL 3 BASIC14.63□□□□□ -0.07
CDH11P55287 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CDH11P55287 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC14.63□□□□□ -0.07
CDH11P55287 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC14.63□□□□□ -0.07
CDH11P55287 AC021097.1-201ENST00000607902 574 ntBASIC14.63□□□□□ -0.07
CDH11P55287 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
CDH11P55287 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.63□□□□□ -0.07
CDH11P55287 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CDH11P55287 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH11P55287 AL109954.1-202ENST00000564051 2148 ntBASIC14.63□□□□□ -0.07
CDH11P55287 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC14.63□□□□□ -0.07
CDH11P55287 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH11P55287 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CDH11P55287 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC14.63□□□□□ -0.07
CDH11P55287 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms