Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 MCCD1P2-201ENST00000423228 335 ntBASIC12.18□□□□□ -0.46
HLA-DMBP28068 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 RPS8P6-201ENST00000426177 609 ntBASIC12.18□□□□□ -0.46
HLA-DMBP28068 SMN2-210ENST00000511812 867 ntTSL 2 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 AL138918.1-201ENST00000568306 659 ntBASIC12.18□□□□□ -0.46
HLA-DMBP28068 COX5A-206ENST00000568783 571 ntTSL 3 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 MIR4321-201ENST00000592276 80 ntBASIC12.18□□□□□ -0.46
HLA-DMBP28068 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 FHL2-212ENST00000607522 759 ntTSL 2 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 AC055717.3-201ENST00000622967 595 ntBASIC12.18□□□□□ -0.46
HLA-DMBP28068 AC079781.4-201ENST00000641908 219 ntBASIC12.18□□□□□ -0.46
HLA-DMBP28068 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 AC018892.3-201ENST00000623986 2499 ntBASIC12.18□□□□□ -0.46
HLA-DMBP28068 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC12.18□□□□□ -0.46
HLA-DMBP28068 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DMBP28068 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 BID-213ENST00000615414 2236 ntTSL 5 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 COA5-202ENST00000409997 557 ntTSL 4 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DMBP28068 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 AC005829.1-201ENST00000570002 483 ntBASIC12.17□□□□□ -0.46
HLA-DMBP28068 AC068137.2-201ENST00000605408 478 ntBASIC12.17□□□□□ -0.46
HLA-DMBP28068 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
HLA-DMBP28068 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms