Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
VCANP13611 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
VCANP13611 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
VCANP13611 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC16.08■□□□□ 0.16
VCANP13611 TBC1D3J-201ENST00000620719 1426 ntBASIC16.08■□□□□ 0.16
VCANP13611 AC008894.3-201ENST00000624324 3103 ntBASIC16.08■□□□□ 0.16
VCANP13611 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.08■□□□□ 0.16
VCANP13611 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.08■□□□□ 0.16
VCANP13611 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
VCANP13611 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VCANP13611 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.08■□□□□ 0.16
VCANP13611 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VCANP13611 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VCANP13611 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC16.08■□□□□ 0.16
VCANP13611 EID1-202ENST00000560490 584 ntTSL 3 BASIC16.08■□□□□ 0.16
VCANP13611 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.08■□□□□ 0.16
VCANP13611 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.08■□□□□ 0.16
VCANP13611 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
VCANP13611 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VCANP13611 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.08■□□□□ 0.16
VCANP13611 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VCANP13611 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
VCANP13611 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
VCANP13611 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC16.08■□□□□ 0.16
VCANP13611 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.07■□□□□ 0.16
VCANP13611 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCANP13611 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VCANP13611 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCANP13611 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCANP13611 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCANP13611 RN7SL396P-201ENST00000471086 295 ntBASIC16.07■□□□□ 0.16
VCANP13611 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC16.07■□□□□ 0.16
VCANP13611 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC16.07■□□□□ 0.16
VCANP13611 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VCANP13611 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.07■□□□□ 0.16
VCANP13611 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VCANP13611 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCANP13611 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VCANP13611 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VCANP13611 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VCANP13611 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCANP13611 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VCANP13611 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC16.07■□□□□ 0.16
VCANP13611 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC16.07■□□□□ 0.16
VCANP13611 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC16.07■□□□□ 0.16
VCANP13611 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC16.07■□□□□ 0.16
VCANP13611 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC16.07■□□□□ 0.16
VCANP13611 AC132938.4-201ENST00000623835 848 ntBASIC16.07■□□□□ 0.16
VCANP13611 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC16.07■□□□□ 0.16
VCANP13611 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCANP13611 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCANP13611 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.07■□□□□ 0.16
VCANP13611 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
VCANP13611 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCANP13611 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCANP13611 GPAA1P2-202ENST00000606848 1787 ntBASIC16.07■□□□□ 0.16
VCANP13611 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCANP13611 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
VCANP13611 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
VCANP13611 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC16.07■□□□□ 0.16
VCANP13611 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.07■□□□□ 0.16
VCANP13611 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC16.07■□□□□ 0.16
VCANP13611 MIR6125-201ENST00000618986 96 ntBASIC16.07■□□□□ 0.16
VCANP13611 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCANP13611 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VCANP13611 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.06■□□□□ 0.16
VCANP13611 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCANP13611 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VCANP13611 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VCANP13611 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
VCANP13611 AL357563.1-201ENST00000404728 395 ntBASIC16.06■□□□□ 0.16
VCANP13611 PSMD4P1-201ENST00000433951 1109 ntBASIC16.06■□□□□ 0.16
VCANP13611 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
VCANP13611 AC018463.1-201ENST00000456674 917 ntBASIC16.06■□□□□ 0.16
VCANP13611 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
VCANP13611 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC16.06■□□□□ 0.16
VCANP13611 IGHEP1-201ENST00000521393 651 ntBASIC16.06■□□□□ 0.16
VCANP13611 AP003171.2-201ENST00000528208 925 ntBASIC16.06■□□□□ 0.16
VCANP13611 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC16.06■□□□□ 0.16
VCANP13611 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC16.06■□□□□ 0.16
VCANP13611 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC16.06■□□□□ 0.16
VCANP13611 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.06■□□□□ 0.16
VCANP13611 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VCANP13611 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
VCANP13611 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
VCANP13611 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCANP13611 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCANP13611 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCANP13611 NDUFS6P1-201ENST00000485187 316 ntBASIC16.06■□□□□ 0.16
VCANP13611 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC16.06■□□□□ 0.16
VCANP13611 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
VCANP13611 AL353622.2-201ENST00000605846 425 ntBASIC16.06■□□□□ 0.16
VCANP13611 MEG3_2.1-201ENST00000611456 105 ntBASIC16.06■□□□□ 0.16
VCANP13611 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.06■□□□□ 0.16
VCANP13611 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.06■□□□□ 0.16
VCANP13611 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC16.06■□□□□ 0.16
VCANP13611 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
VCANP13611 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VCANP13611 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VCANP13611 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms