Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
CD74P04233 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC13.41□□□□□ -0.26
CD74P04233 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CD74P04233 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CD74P04233 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CD74P04233 AC005840.4-201ENST00000541242 2494 ntBASIC13.4□□□□□ -0.26
CD74P04233 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CD74P04233 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CD74P04233 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CD74P04233 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CD74P04233 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC13.4□□□□□ -0.26
CD74P04233 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
CD74P04233 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CD74P04233 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CD74P04233 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
CD74P04233 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
CD74P04233 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CD74P04233 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CD74P04233 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC13.4□□□□□ -0.26
CD74P04233 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CD74P04233 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC13.4□□□□□ -0.26
CD74P04233 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC13.4□□□□□ -0.26
CD74P04233 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CD74P04233 SCARNA2-201ENST00000458748 420 ntBASIC13.4□□□□□ -0.26
CD74P04233 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC13.4□□□□□ -0.26
CD74P04233 CFL1-202ENST00000524553 860 ntTSL 2 BASIC13.4□□□□□ -0.26
CD74P04233 AL049597.2-201ENST00000565575 961 ntBASIC13.4□□□□□ -0.26
CD74P04233 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC13.4□□□□□ -0.26
CD74P04233 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC13.4□□□□□ -0.26
CD74P04233 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC13.4□□□□□ -0.26
CD74P04233 AL732292.2-201ENST00000609649 430 ntBASIC13.4□□□□□ -0.26
CD74P04233 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC13.4□□□□□ -0.26
CD74P04233 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC13.4□□□□□ -0.26
CD74P04233 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CD74P04233 AC018892.3-201ENST00000623986 2499 ntBASIC13.4□□□□□ -0.26
CD74P04233 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CD74P04233 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC13.4□□□□□ -0.26
CD74P04233 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CD74P04233 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
CD74P04233 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CD74P04233 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CD74P04233 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CD74P04233 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
CD74P04233 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
CD74P04233 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CD74P04233 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CD74P04233 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CD74P04233 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
CD74P04233 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC13.4□□□□□ -0.27
CD74P04233 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC13.39□□□□□ -0.27
CD74P04233 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
CD74P04233 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC13.39□□□□□ -0.27
CD74P04233 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC13.39□□□□□ -0.27
CD74P04233 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
CD74P04233 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
CD74P04233 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC13.39□□□□□ -0.27
CD74P04233 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC13.39□□□□□ -0.27
CD74P04233 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC13.39□□□□□ -0.27
CD74P04233 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC13.39□□□□□ -0.27
CD74P04233 KRT18P34-201ENST00000488218 1270 ntBASIC13.39□□□□□ -0.27
CD74P04233 AC136632.2-201ENST00000512891 861 ntBASIC13.39□□□□□ -0.27
CD74P04233 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC13.39□□□□□ -0.27
CD74P04233 ETFA-208ENST00000559602 792 ntTSL 3 BASIC13.39□□□□□ -0.27
CD74P04233 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC13.39□□□□□ -0.27
CD74P04233 OR7E47P-204ENST00000575924 449 ntBASIC13.39□□□□□ -0.27
CD74P04233 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC13.39□□□□□ -0.27
CD74P04233 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 AL645728.2-201ENST00000641974 660 ntBASIC13.39□□□□□ -0.27
CD74P04233 IER3-202ENST00000376377 1350 ntBASIC13.39□□□□□ -0.27
CD74P04233 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC13.39□□□□□ -0.27
CD74P04233 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
CD74P04233 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC13.39□□□□□ -0.27
CD74P04233 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC13.39□□□□□ -0.27
CD74P04233 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC13.39□□□□□ -0.27
CD74P04233 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 AC041040.2-201ENST00000622926 2899 ntBASIC13.39□□□□□ -0.27
CD74P04233 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
CD74P04233 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CD74P04233 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.39□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms