Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL2A1P02458 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL2A1P02458 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL2A1P02458 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
COL2A1P02458 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL2A1P02458 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL2A1P02458 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL2A1P02458 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL2A1P02458 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC18.24■□□□□ 0.51
COL2A1P02458 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL2A1P02458 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL2A1P02458 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL2A1P02458 ILF3-AS1-201ENST00000591501 1983 ntBASIC18.24■□□□□ 0.51
COL2A1P02458 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
COL2A1P02458 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL2A1P02458 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL2A1P02458 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.24■□□□□ 0.51
COL2A1P02458 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL2A1P02458 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL2A1P02458 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL2A1P02458 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
COL2A1P02458 AC018695.7-201ENST00000624587 2492 ntBASIC18.24■□□□□ 0.51
COL2A1P02458 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL2A1P02458 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
COL2A1P02458 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL2A1P02458 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
COL2A1P02458 NME6-203ENST00000415644 849 ntTSL 2 BASIC18.24■□□□□ 0.51
COL2A1P02458 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL2A1P02458 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC18.24■□□□□ 0.51
COL2A1P02458 AC004066.1-201ENST00000502488 802 ntBASIC18.24■□□□□ 0.51
COL2A1P02458 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL2A1P02458 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC18.24■□□□□ 0.51
COL2A1P02458 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC18.24■□□□□ 0.51
COL2A1P02458 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC18.24■□□□□ 0.51
COL2A1P02458 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
COL2A1P02458 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL2A1P02458 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL2A1P02458 BLK-205ENST00000529894 2017 ntTSL 5 BASIC18.24■□□□□ 0.51
COL2A1P02458 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL2A1P02458 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL2A1P02458 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL2A1P02458 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC18.23■□□□□ 0.51
COL2A1P02458 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL2A1P02458 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL2A1P02458 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL2A1P02458 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL2A1P02458 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL2A1P02458 AHCYP2-201ENST00000430630 1300 ntBASIC18.23■□□□□ 0.51
COL2A1P02458 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL2A1P02458 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL2A1P02458 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC18.23■□□□□ 0.51
COL2A1P02458 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.23■□□□□ 0.51
COL2A1P02458 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
COL2A1P02458 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
COL2A1P02458 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC18.23■□□□□ 0.51
COL2A1P02458 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL2A1P02458 MIR1247-201ENST00000408206 136 ntBASIC18.23■□□□□ 0.51
COL2A1P02458 GOLGA2P4-201ENST00000441462 777 ntBASIC18.23■□□□□ 0.51
COL2A1P02458 Z93015.1-201ENST00000451718 390 ntBASIC18.23■□□□□ 0.51
COL2A1P02458 ZNF767P-206ENST00000513792 565 ntBASIC18.23■□□□□ 0.51
COL2A1P02458 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
COL2A1P02458 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC18.23■□□□□ 0.51
COL2A1P02458 C2orf69P2-201ENST00000562032 1123 ntBASIC18.23■□□□□ 0.51
COL2A1P02458 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL2A1P02458 AL603764.1-201ENST00000636452 321 ntBASIC18.23■□□□□ 0.51
COL2A1P02458 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
COL2A1P02458 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
COL2A1P02458 ACE-203ENST00000413513 2237 ntTSL 2 BASIC18.23■□□□□ 0.51
COL2A1P02458 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL2A1P02458 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL2A1P02458 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL2A1P02458 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL2A1P02458 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL2A1P02458 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL2A1P02458 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL2A1P02458 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL2A1P02458 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
COL2A1P02458 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL2A1P02458 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL2A1P02458 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL2A1P02458 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL2A1P02458 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL2A1P02458 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL2A1P02458 AMT-224ENST00000635808 1610 ntTSL 5 BASIC18.22■□□□□ 0.51
COL2A1P02458 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC18.22■□□□□ 0.51
COL2A1P02458 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL2A1P02458 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL2A1P02458 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL2A1P02458 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL2A1P02458 RPL5P21-201ENST00000404620 815 ntBASIC18.22■□□□□ 0.51
COL2A1P02458 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC18.22■□□□□ 0.51
COL2A1P02458 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
COL2A1P02458 AC006033.1-201ENST00000440505 426 ntBASIC18.22■□□□□ 0.51
COL2A1P02458 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC18.22■□□□□ 0.51
COL2A1P02458 CNN2P10-201ENST00000443067 918 ntBASIC18.22■□□□□ 0.51
COL2A1P02458 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
COL2A1P02458 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
COL2A1P02458 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL2A1P02458 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL2A1P02458 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms