Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RAPGEF3O95398 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RAPGEF3O95398 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC23.32■■□□□ 1.32
RAPGEF3O95398 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC23.32■■□□□ 1.32
RAPGEF3O95398 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
RAPGEF3O95398 AC106794.1-201ENST00000506935 792 ntBASIC23.32■■□□□ 1.32
RAPGEF3O95398 MARK2P5-201ENST00000507649 634 ntBASIC23.32■■□□□ 1.32
RAPGEF3O95398 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC23.32■■□□□ 1.32
RAPGEF3O95398 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC23.32■■□□□ 1.32
RAPGEF3O95398 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RAPGEF3O95398 GPR39-203ENST00000622084 900 ntTSL 5 BASIC23.32■■□□□ 1.32
RAPGEF3O95398 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
RAPGEF3O95398 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC23.32■■□□□ 1.32
RAPGEF3O95398 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
RAPGEF3O95398 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC23.32■■□□□ 1.32
RAPGEF3O95398 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
RAPGEF3O95398 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
RAPGEF3O95398 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RAPGEF3O95398 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RAPGEF3O95398 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RAPGEF3O95398 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RAPGEF3O95398 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC23.32■■□□□ 1.32
RAPGEF3O95398 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
RAPGEF3O95398 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC23.32■■□□□ 1.32
RAPGEF3O95398 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RAPGEF3O95398 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
RAPGEF3O95398 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RAPGEF3O95398 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RAPGEF3O95398 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
RAPGEF3O95398 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
RAPGEF3O95398 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
RAPGEF3O95398 AC004899.1-201ENST00000424687 1714 ntBASIC23.31■■□□□ 1.32
RAPGEF3O95398 AC006335.1-201ENST00000445200 547 ntBASIC23.31■■□□□ 1.32
RAPGEF3O95398 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC23.31■■□□□ 1.32
RAPGEF3O95398 AC242376.1-201ENST00000559033 726 ntBASIC23.31■■□□□ 1.32
RAPGEF3O95398 SYT17-208ENST00000568433 812 ntTSL 3 BASIC23.31■■□□□ 1.32
RAPGEF3O95398 AP001065.2-201ENST00000617205 644 ntBASIC23.31■■□□□ 1.32
RAPGEF3O95398 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RAPGEF3O95398 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RAPGEF3O95398 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RAPGEF3O95398 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
RAPGEF3O95398 AL157791.1-201ENST00000553667 1699 ntBASIC23.31■■□□□ 1.32
RAPGEF3O95398 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC23.31■■□□□ 1.32
RAPGEF3O95398 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RAPGEF3O95398 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
RAPGEF3O95398 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
RAPGEF3O95398 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
RAPGEF3O95398 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
RAPGEF3O95398 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RAPGEF3O95398 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC23.3■■□□□ 1.32
RAPGEF3O95398 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
RAPGEF3O95398 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC23.3■■□□□ 1.32
RAPGEF3O95398 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC23.3■■□□□ 1.32
RAPGEF3O95398 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
RAPGEF3O95398 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
RAPGEF3O95398 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
RAPGEF3O95398 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RAPGEF3O95398 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
RAPGEF3O95398 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RAPGEF3O95398 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC23.3■■□□□ 1.32
RAPGEF3O95398 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC23.3■■□□□ 1.32
RAPGEF3O95398 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
RAPGEF3O95398 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
RAPGEF3O95398 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RAPGEF3O95398 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RAPGEF3O95398 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
RAPGEF3O95398 B9D1-203ENST00000395615 805 ntTSL 3 BASIC23.3■■□□□ 1.32
RAPGEF3O95398 AL139094.1-201ENST00000405549 1188 ntBASIC23.3■■□□□ 1.32
RAPGEF3O95398 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RAPGEF3O95398 EIF3FP3-201ENST00000434851 1086 ntBASIC23.3■■□□□ 1.32
RAPGEF3O95398 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC23.3■■□□□ 1.32
RAPGEF3O95398 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC23.3■■□□□ 1.32
RAPGEF3O95398 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC23.3■■□□□ 1.32
RAPGEF3O95398 AC106820.3-201ENST00000561653 397 ntBASIC23.3■■□□□ 1.32
RAPGEF3O95398 INO80C-210ENST00000590757 595 ntTSL 2 BASIC23.3■■□□□ 1.32
RAPGEF3O95398 AC132192.2-201ENST00000596206 1147 ntBASIC23.3■■□□□ 1.32
RAPGEF3O95398 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC23.3■■□□□ 1.32
RAPGEF3O95398 YRDCP1-201ENST00000621419 643 ntBASIC23.3■■□□□ 1.32
RAPGEF3O95398 AC068587.8-201ENST00000641239 219 ntBASIC23.3■■□□□ 1.32
RAPGEF3O95398 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RAPGEF3O95398 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC23.3■■□□□ 1.32
RAPGEF3O95398 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
RAPGEF3O95398 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC23.3■■□□□ 1.32
RAPGEF3O95398 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
RAPGEF3O95398 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
RAPGEF3O95398 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
RAPGEF3O95398 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC23.29■■□□□ 1.32
RAPGEF3O95398 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
RAPGEF3O95398 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
RAPGEF3O95398 RPS15-201ENST00000233609 534 ntTSL 2 BASIC23.29■■□□□ 1.32
RAPGEF3O95398 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
RAPGEF3O95398 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
RAPGEF3O95398 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
RAPGEF3O95398 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC23.29■■□□□ 1.32
RAPGEF3O95398 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
RAPGEF3O95398 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC23.29■■□□□ 1.32
RAPGEF3O95398 AC078991.1-201ENST00000437297 610 ntBASIC23.29■■□□□ 1.32
RAPGEF3O95398 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC23.29■■□□□ 1.32
RAPGEF3O95398 CTBP2P4-201ENST00000513884 920 ntBASIC23.29■■□□□ 1.32
RAPGEF3O95398 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms