Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.66■□□□□ 0.1
VPS4BO75351 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4BO75351 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.66■□□□□ 0.1
VPS4BO75351 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4BO75351 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS4BO75351 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
VPS4BO75351 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
VPS4BO75351 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VPS4BO75351 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS4BO75351 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4BO75351 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS4BO75351 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4BO75351 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4BO75351 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4BO75351 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4BO75351 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.65■□□□□ 0.1
VPS4BO75351 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
VPS4BO75351 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS4BO75351 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4BO75351 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4BO75351 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4BO75351 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4BO75351 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC15.65■□□□□ 0.1
VPS4BO75351 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
VPS4BO75351 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
VPS4BO75351 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS4BO75351 CNN2P2-201ENST00000443536 909 ntBASIC15.65■□□□□ 0.1
VPS4BO75351 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC15.65■□□□□ 0.1
VPS4BO75351 CNN2P3-201ENST00000450201 906 ntBASIC15.65■□□□□ 0.1
VPS4BO75351 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
VPS4BO75351 SLBP-205ENST00000488267 987 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS4BO75351 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS4BO75351 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.65■□□□□ 0.1
VPS4BO75351 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.65■□□□□ 0.1
VPS4BO75351 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC15.65■□□□□ 0.1
VPS4BO75351 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4BO75351 AC015911.4-201ENST00000588022 1070 ntBASIC15.65■□□□□ 0.1
VPS4BO75351 AL136317.3-201ENST00000618497 906 ntBASIC15.65■□□□□ 0.1
VPS4BO75351 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
VPS4BO75351 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4BO75351 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4BO75351 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4BO75351 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4BO75351 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4BO75351 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS4BO75351 AC087481.3-201ENST00000602886 1894 ntBASIC15.65■□□□□ 0.1
VPS4BO75351 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4BO75351 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4BO75351 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4BO75351 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS4BO75351 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
VPS4BO75351 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4BO75351 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4BO75351 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.64■□□□□ 0.09
VPS4BO75351 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4BO75351 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4BO75351 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.64■□□□□ 0.09
VPS4BO75351 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4BO75351 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4BO75351 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4BO75351 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4BO75351 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4BO75351 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
VPS4BO75351 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4BO75351 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4BO75351 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC15.64■□□□□ 0.09
VPS4BO75351 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4BO75351 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4BO75351 TIMM8BP1-201ENST00000452384 211 ntBASIC15.64■□□□□ 0.09
VPS4BO75351 OARD1-208ENST00000469104 704 ntTSL 2 BASIC15.64■□□□□ 0.09
VPS4BO75351 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC15.64■□□□□ 0.09
VPS4BO75351 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.64■□□□□ 0.09
VPS4BO75351 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC15.64■□□□□ 0.09
VPS4BO75351 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC15.64■□□□□ 0.09
VPS4BO75351 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4BO75351 DUX4L27-201ENST00000554796 1261 ntBASIC15.64■□□□□ 0.09
VPS4BO75351 AC005225.4-201ENST00000557330 545 ntBASIC15.64■□□□□ 0.09
VPS4BO75351 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC15.64■□□□□ 0.09
VPS4BO75351 DBET-201ENST00000630918 3363 ntBASIC15.64■□□□□ 0.09
VPS4BO75351 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4BO75351 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4BO75351 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
VPS4BO75351 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.64■□□□□ 0.09
VPS4BO75351 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4BO75351 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.64■□□□□ 0.09
VPS4BO75351 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.64■□□□□ 0.09
VPS4BO75351 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4BO75351 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.64■□□□□ 0.09
VPS4BO75351 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4BO75351 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4BO75351 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.64■□□□□ 0.09
VPS4BO75351 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS4BO75351 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VPS4BO75351 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
VPS4BO75351 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VPS4BO75351 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VPS4BO75351 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.63■□□□□ 0.09
VPS4BO75351 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.63■□□□□ 0.09
VPS4BO75351 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.63■□□□□ 0.09
VPS4BO75351 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 64.3 ms