Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC15.94■□□□□ 0.14
SHOX2O60902 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC15.94■□□□□ 0.14
SHOX2O60902 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.94■□□□□ 0.14
SHOX2O60902 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SHOX2O60902 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SHOX2O60902 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC15.94■□□□□ 0.14
SHOX2O60902 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
SHOX2O60902 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
SHOX2O60902 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
SHOX2O60902 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SHOX2O60902 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SHOX2O60902 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SHOX2O60902 HCG4-201ENST00000418983 998 ntBASIC15.94■□□□□ 0.14
SHOX2O60902 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC15.94■□□□□ 0.14
SHOX2O60902 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC15.94■□□□□ 0.14
SHOX2O60902 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC15.94■□□□□ 0.14
SHOX2O60902 AC107918.2-201ENST00000530817 355 ntBASIC15.94■□□□□ 0.14
SHOX2O60902 PPOX-219ENST00000544598 813 ntTSL 2 BASIC15.94■□□□□ 0.14
SHOX2O60902 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SHOX2O60902 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.94■□□□□ 0.14
SHOX2O60902 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC15.94■□□□□ 0.14
SHOX2O60902 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SHOX2O60902 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC15.94■□□□□ 0.14
SHOX2O60902 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.94■□□□□ 0.14
SHOX2O60902 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.94■□□□□ 0.14
SHOX2O60902 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC15.94■□□□□ 0.14
SHOX2O60902 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SHOX2O60902 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SHOX2O60902 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
SHOX2O60902 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
SHOX2O60902 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
SHOX2O60902 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SHOX2O60902 INTS4P1-203ENST00000641008 3683 ntBASIC15.93■□□□□ 0.14
SHOX2O60902 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHOX2O60902 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHOX2O60902 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC15.93■□□□□ 0.14
SHOX2O60902 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHOX2O60902 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SHOX2O60902 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHOX2O60902 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.93■□□□□ 0.14
SHOX2O60902 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHOX2O60902 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHOX2O60902 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SHOX2O60902 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHOX2O60902 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC15.93■□□□□ 0.14
SHOX2O60902 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
SHOX2O60902 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHOX2O60902 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHOX2O60902 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SHOX2O60902 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC15.93■□□□□ 0.14
SHOX2O60902 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHOX2O60902 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC15.93■□□□□ 0.14
SHOX2O60902 AC011498.5-201ENST00000592027 486 ntBASIC15.93■□□□□ 0.14
SHOX2O60902 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
SHOX2O60902 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHOX2O60902 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHOX2O60902 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHOX2O60902 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHOX2O60902 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHOX2O60902 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHOX2O60902 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHOX2O60902 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHOX2O60902 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHOX2O60902 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.93■□□□□ 0.14
SHOX2O60902 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHOX2O60902 AC015802.1-201ENST00000588104 1449 ntBASIC15.93■□□□□ 0.14
SHOX2O60902 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC15.93■□□□□ 0.14
SHOX2O60902 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SHOX2O60902 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
SHOX2O60902 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SHOX2O60902 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC15.92■□□□□ 0.14
SHOX2O60902 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SHOX2O60902 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
SHOX2O60902 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SHOX2O60902 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SHOX2O60902 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SHOX2O60902 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
SHOX2O60902 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SHOX2O60902 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
SHOX2O60902 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SHOX2O60902 LSS-211ENST00000522411 2523 ntTSL 2 BASIC15.92■□□□□ 0.14
SHOX2O60902 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SHOX2O60902 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SHOX2O60902 TLE1-202ENST00000376484 666 ntTSL 3 BASIC15.92■□□□□ 0.14
SHOX2O60902 SLC25A6P2-201ENST00000497974 877 ntBASIC15.92■□□□□ 0.14
SHOX2O60902 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC15.92■□□□□ 0.14
SHOX2O60902 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC15.92■□□□□ 0.14
SHOX2O60902 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC15.92■□□□□ 0.14
SHOX2O60902 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC15.92■□□□□ 0.14
SHOX2O60902 RN7SL850P-201ENST00000579959 291 ntBASIC15.92■□□□□ 0.14
SHOX2O60902 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC15.92■□□□□ 0.14
SHOX2O60902 AC079776.2-201ENST00000641154 1609 ntBASIC15.92■□□□□ 0.14
SHOX2O60902 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SHOX2O60902 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.92■□□□□ 0.14
SHOX2O60902 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.92■□□□□ 0.14
SHOX2O60902 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SHOX2O60902 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.92■□□□□ 0.14
SHOX2O60902 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SHOX2O60902 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
SHOX2O60902 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms