Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.87■□□□□ 0.13
PHGDHO43175 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.87■□□□□ 0.13
PHGDHO43175 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.87■□□□□ 0.13
PHGDHO43175 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.87■□□□□ 0.13
PHGDHO43175 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
PHGDHO43175 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.87■□□□□ 0.13
PHGDHO43175 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.87■□□□□ 0.13
PHGDHO43175 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 MIR940-201ENST00000401276 94 ntBASIC15.87■□□□□ 0.13
PHGDHO43175 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC15.87■□□□□ 0.13
PHGDHO43175 ADH5P3-201ENST00000433842 1137 ntBASIC15.87■□□□□ 0.13
PHGDHO43175 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
PHGDHO43175 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.87■□□□□ 0.13
PHGDHO43175 RNA5SP410-201ENST00000516285 106 ntBASIC15.87■□□□□ 0.13
PHGDHO43175 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
PHGDHO43175 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.87■□□□□ 0.13
PHGDHO43175 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.87■□□□□ 0.13
PHGDHO43175 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.87■□□□□ 0.13
PHGDHO43175 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.87■□□□□ 0.13
PHGDHO43175 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.87■□□□□ 0.13
PHGDHO43175 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.87■□□□□ 0.13
PHGDHO43175 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC15.87■□□□□ 0.13
PHGDHO43175 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.87■□□□□ 0.13
PHGDHO43175 REXO1L1P-202ENST00000608646 1974 ntBASIC15.87■□□□□ 0.13
PHGDHO43175 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
PHGDHO43175 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.87■□□□□ 0.13
PHGDHO43175 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.87■□□□□ 0.13
PHGDHO43175 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.87■□□□□ 0.13
PHGDHO43175 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.87■□□□□ 0.13
PHGDHO43175 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC15.87■□□□□ 0.13
PHGDHO43175 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PHGDHO43175 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.87■□□□□ 0.13
PHGDHO43175 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PHGDHO43175 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PHGDHO43175 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.86■□□□□ 0.13
PHGDHO43175 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.86■□□□□ 0.13
PHGDHO43175 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.86■□□□□ 0.13
PHGDHO43175 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
PHGDHO43175 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PHGDHO43175 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.86■□□□□ 0.13
PHGDHO43175 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.86■□□□□ 0.13
PHGDHO43175 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.86■□□□□ 0.13
PHGDHO43175 AL136982.4-201ENST00000437689 1740 ntBASIC15.86■□□□□ 0.13
PHGDHO43175 AC126755.1-201ENST00000525846 6405 ntBASIC15.86■□□□□ 0.13
PHGDHO43175 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
PHGDHO43175 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PHGDHO43175 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PHGDHO43175 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.86■□□□□ 0.13
PHGDHO43175 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PHGDHO43175 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.86■□□□□ 0.13
PHGDHO43175 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.86■□□□□ 0.13
PHGDHO43175 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
PHGDHO43175 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PHGDHO43175 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PHGDHO43175 TEX30-205ENST00000376029 959 ntTSL 2 BASIC15.86■□□□□ 0.13
PHGDHO43175 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
PHGDHO43175 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.86■□□□□ 0.13
PHGDHO43175 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.86■□□□□ 0.13
PHGDHO43175 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.86■□□□□ 0.13
PHGDHO43175 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PHGDHO43175 CBFB-203ENST00000561924 584 ntTSL 5 BASIC15.86■□□□□ 0.13
PHGDHO43175 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
PHGDHO43175 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PHGDHO43175 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC15.86■□□□□ 0.13
PHGDHO43175 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PHGDHO43175 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
PHGDHO43175 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PHGDHO43175 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15.86■□□□□ 0.13
PHGDHO43175 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
PHGDHO43175 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PHGDHO43175 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PHGDHO43175 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.86■□□□□ 0.13
PHGDHO43175 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PHGDHO43175 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.86■□□□□ 0.13
PHGDHO43175 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
PHGDHO43175 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PHGDHO43175 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms