Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 TARDBPP1-201ENST00000442013 1203 ntBASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 RHOA-206ENST00000454011 889 ntTSL 2 BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 PHKG1P2-201ENST00000457537 863 ntBASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 RN7SL399P-201ENST00000471648 279 ntBASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 HILS1-202ENST00000545329 423 ntBASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 RERG-209ENST00000546331 1383 ntTSL 2 BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 AC017083.2-201ENST00000608069 979 ntBASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 WFDC1-204ENST00000613603 549 ntBASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 MIR8072-201ENST00000614241 80 ntBASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 AD000864.1-201ENST00000624076 2295 ntBASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 CA12-203ENST00000422263 2556 ntTSL 2 BASIC18.36■□□□□ 0.53
CTDP1Q9Y5B0 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 AC134407.2-201ENST00000625089 1978 ntBASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 ARSEP1-201ENST00000420443 635 ntBASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 RAB43P1-201ENST00000561790 589 ntBASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 AL450472.2-201ENST00000603663 1156 ntBASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTDP1Q9Y5B0 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CTDP1Q9Y5B0 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CTDP1Q9Y5B0 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CTDP1Q9Y5B0 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
CTDP1Q9Y5B0 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
CTDP1Q9Y5B0 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CTDP1Q9Y5B0 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms