Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 FALEC-201ENST00000416894 566 ntTSL 3 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 LINC02560-201ENST00000596379 459 ntBASIC15.51■□□□□ 0.07
VPS4AQ9UN37 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 AL359881.2-201ENST00000602973 570 ntBASIC15.51■□□□□ 0.07
VPS4AQ9UN37 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 AC008761.3-201ENST00000624803 892 ntBASIC15.51■□□□□ 0.07
VPS4AQ9UN37 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4AQ9UN37 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 AC112504.1-201ENST00000623415 1841 ntBASIC15.5■□□□□ 0.07
VPS4AQ9UN37 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 AC126755.1-201ENST00000525846 6405 ntBASIC15.5■□□□□ 0.07
VPS4AQ9UN37 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 BAD-202ENST00000394531 631 ntTSL 3 BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 ADH5P3-201ENST00000433842 1137 ntBASIC15.5■□□□□ 0.07
VPS4AQ9UN37 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 BAD-207ENST00000544785 525 ntTSL 3 BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 AL512356.2-201ENST00000546955 174 ntBASIC15.5■□□□□ 0.07
VPS4AQ9UN37 MIR3909-201ENST00000579518 119 ntBASIC15.5■□□□□ 0.07
VPS4AQ9UN37 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 AL645728.2-201ENST00000641974 660 ntBASIC15.5■□□□□ 0.07
VPS4AQ9UN37 AC069224.1-201ENST00000566372 1715 ntBASIC15.5■□□□□ 0.07
VPS4AQ9UN37 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 AP005117.1-202ENST00000581724 1908 ntBASIC15.5■□□□□ 0.07
VPS4AQ9UN37 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC15.5■□□□□ 0.07
VPS4AQ9UN37 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms