Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 AC148477.4-201ENST00000613430 1793 ntBASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 HLA-H-201ENST00000383620 1096 ntBASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 SLC25A1P1-201ENST00000528351 927 ntBASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 AC027601.4-201ENST00000611259 610 ntBASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 FAM197Y3-203ENST00000618346 717 ntBASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMA1Q9UHB6 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 STRN-202ENST00000379213 2254 ntTSL 5 BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 CICP23-201ENST00000605013 2741 ntBASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 RN7SL589P-201ENST00000481268 310 ntBASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 AC106730.1-201ENST00000566722 1090 ntBASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 GPI-205ENST00000586425 1799 ntTSL 5 BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 AC023024.2-201ENST00000623561 1993 ntBASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC17.37■□□□□ 0.37
LIMA1Q9UHB6 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC17.36■□□□□ 0.37
LIMA1Q9UHB6 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms