Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 FO393414.2-201ENST00000405153 598 ntBASIC20.4■□□□□ 0.86
SMC4Q9NTJ3 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC20.4■□□□□ 0.86
SMC4Q9NTJ3 AC092580.3-201ENST00000430932 139 ntBASIC20.4■□□□□ 0.86
SMC4Q9NTJ3 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
SMC4Q9NTJ3 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SMC4Q9NTJ3 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
SMC4Q9NTJ3 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC20.4■□□□□ 0.86
SMC4Q9NTJ3 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC20.4■□□□□ 0.86
SMC4Q9NTJ3 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SMC4Q9NTJ3 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SMC4Q9NTJ3 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
SMC4Q9NTJ3 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC20.4■□□□□ 0.86
SMC4Q9NTJ3 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
SMC4Q9NTJ3 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC20.4■□□□□ 0.86
SMC4Q9NTJ3 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC20.4■□□□□ 0.86
SMC4Q9NTJ3 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC20.4■□□□□ 0.86
SMC4Q9NTJ3 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
SMC4Q9NTJ3 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC20.4■□□□□ 0.86
SMC4Q9NTJ3 MBP-202ENST00000355994 2772 ntTSL 5 BASIC20.4■□□□□ 0.86
SMC4Q9NTJ3 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
SMC4Q9NTJ3 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
SMC4Q9NTJ3 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
SMC4Q9NTJ3 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC20.39■□□□□ 0.86
SMC4Q9NTJ3 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
SMC4Q9NTJ3 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.86
SMC4Q9NTJ3 FER1L4-210ENST00000615531 5998 ntBASIC20.39■□□□□ 0.86
SMC4Q9NTJ3 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
SMC4Q9NTJ3 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
SMC4Q9NTJ3 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SMC4Q9NTJ3 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SMC4Q9NTJ3 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC20.39■□□□□ 0.85
SMC4Q9NTJ3 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SMC4Q9NTJ3 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC20.39■□□□□ 0.85
SMC4Q9NTJ3 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
SMC4Q9NTJ3 AL162727.3-201ENST00000635661 2787 ntBASIC20.39■□□□□ 0.85
SMC4Q9NTJ3 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
SMC4Q9NTJ3 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SMC4Q9NTJ3 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SMC4Q9NTJ3 MIR943-201ENST00000401286 94 ntBASIC20.39■□□□□ 0.85
SMC4Q9NTJ3 AL645939.2-201ENST00000427340 991 ntBASIC20.39■□□□□ 0.85
SMC4Q9NTJ3 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SMC4Q9NTJ3 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC20.39■□□□□ 0.85
SMC4Q9NTJ3 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
SMC4Q9NTJ3 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
SMC4Q9NTJ3 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SMC4Q9NTJ3 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SMC4Q9NTJ3 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC20.39■□□□□ 0.85
SMC4Q9NTJ3 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SMC4Q9NTJ3 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SMC4Q9NTJ3 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SMC4Q9NTJ3 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SMC4Q9NTJ3 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC20.39■□□□□ 0.85
SMC4Q9NTJ3 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SMC4Q9NTJ3 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 GRN-214ENST00000589265 1632 ntTSL 5 BASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 AL607033.1-201ENST00000623900 1599 ntBASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 AC136604.1-201ENST00000418535 575 ntBASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 AC027369.6-201ENST00000525520 931 ntBASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 AL033527.5-202ENST00000641632 1098 ntBASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC20.38■□□□□ 0.85
SMC4Q9NTJ3 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 ILF3-AS1-201ENST00000591501 1983 ntBASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 GGCT-205ENST00000409436 954 ntTSL 3 BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms