Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC13.98□□□□□ -0.17
NKX3-1Q99801 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC13.98□□□□□ -0.17
NKX3-1Q99801 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
NKX3-1Q99801 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX3-1Q99801 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC13.98□□□□□ -0.17
NKX3-1Q99801 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
NKX3-1Q99801 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX3-1Q99801 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
NKX3-1Q99801 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
NKX3-1Q99801 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
NKX3-1Q99801 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
NKX3-1Q99801 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX3-1Q99801 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
NKX3-1Q99801 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC13.98□□□□□ -0.17
NKX3-1Q99801 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX3-1Q99801 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC13.98□□□□□ -0.17
NKX3-1Q99801 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
NKX3-1Q99801 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
NKX3-1Q99801 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC13.98□□□□□ -0.17
NKX3-1Q99801 AC108751.1-201ENST00000490852 363 ntBASIC13.98□□□□□ -0.17
NKX3-1Q99801 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC13.98□□□□□ -0.17
NKX3-1Q99801 AL109954.1-202ENST00000564051 2148 ntBASIC13.98□□□□□ -0.17
NKX3-1Q99801 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX3-1Q99801 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC13.98□□□□□ -0.17
NKX3-1Q99801 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
NKX3-1Q99801 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX3-1Q99801 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC13.98□□□□□ -0.17
NKX3-1Q99801 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX3-1Q99801 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
NKX3-1Q99801 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX3-1Q99801 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX3-1Q99801 AC134407.2-201ENST00000625089 1978 ntBASIC13.98□□□□□ -0.17
NKX3-1Q99801 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC13.98□□□□□ -0.17
NKX3-1Q99801 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
NKX3-1Q99801 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NKX3-1Q99801 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
NKX3-1Q99801 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NKX3-1Q99801 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NKX3-1Q99801 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.97□□□□□ -0.17
NKX3-1Q99801 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
NKX3-1Q99801 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC13.97□□□□□ -0.17
NKX3-1Q99801 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC13.97□□□□□ -0.17
NKX3-1Q99801 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
NKX3-1Q99801 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC13.97□□□□□ -0.17
NKX3-1Q99801 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC13.97□□□□□ -0.17
NKX3-1Q99801 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
NKX3-1Q99801 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
NKX3-1Q99801 AC018892.3-201ENST00000623986 2499 ntBASIC13.97□□□□□ -0.17
NKX3-1Q99801 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NKX3-1Q99801 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NKX3-1Q99801 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
NKX3-1Q99801 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC13.97□□□□□ -0.17
NKX3-1Q99801 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
NKX3-1Q99801 AC093724.1-201ENST00000448659 1027 ntBASIC13.97□□□□□ -0.17
NKX3-1Q99801 RPL13AP23-201ENST00000480739 586 ntBASIC13.97□□□□□ -0.17
NKX3-1Q99801 RNA5SP419-201ENST00000515908 135 ntBASIC13.97□□□□□ -0.17
NKX3-1Q99801 SLC25A1P1-201ENST00000528351 927 ntBASIC13.97□□□□□ -0.17
NKX3-1Q99801 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC13.97□□□□□ -0.17
NKX3-1Q99801 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC13.97□□□□□ -0.17
NKX3-1Q99801 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC13.97□□□□□ -0.17
NKX3-1Q99801 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC13.97□□□□□ -0.17
NKX3-1Q99801 AC021097.1-201ENST00000607902 574 ntBASIC13.97□□□□□ -0.17
NKX3-1Q99801 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC13.97□□□□□ -0.17
NKX3-1Q99801 NME4-212ENST00000621774 904 ntTSL 3 BASIC13.97□□□□□ -0.17
NKX3-1Q99801 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC13.97□□□□□ -0.17
NKX3-1Q99801 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
NKX3-1Q99801 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
NKX3-1Q99801 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
NKX3-1Q99801 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
NKX3-1Q99801 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NKX3-1Q99801 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
NKX3-1Q99801 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
NKX3-1Q99801 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
NKX3-1Q99801 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
NKX3-1Q99801 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NKX3-1Q99801 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NKX3-1Q99801 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
NKX3-1Q99801 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC13.97□□□□□ -0.17
NKX3-1Q99801 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
NKX3-1Q99801 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC13.97□□□□□ -0.17
NKX3-1Q99801 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC13.97□□□□□ -0.17
NKX3-1Q99801 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NKX3-1Q99801 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
NKX3-1Q99801 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
NKX3-1Q99801 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NKX3-1Q99801 ZNF259P1-201ENST00000407656 1365 ntBASIC13.96□□□□□ -0.17
NKX3-1Q99801 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC13.96□□□□□ -0.17
NKX3-1Q99801 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
NKX3-1Q99801 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
NKX3-1Q99801 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
NKX3-1Q99801 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
NKX3-1Q99801 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
NKX3-1Q99801 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC13.96□□□□□ -0.17
NKX3-1Q99801 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
NKX3-1Q99801 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
NKX3-1Q99801 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
NKX3-1Q99801 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
NKX3-1Q99801 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC13.96□□□□□ -0.17
NKX3-1Q99801 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
NKX3-1Q99801 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms