Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 AL136379.1-201ENST00000623471 2642 ntBASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 FDX1P1-201ENST00000449115 551 ntBASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 AC120114.3-201ENST00000611923 658 ntBASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 TCAF2P1-201ENST00000291129 2421 ntBASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.53■□□□□ 0.24
ATG4AQ8WYN0 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 TFAMP1-201ENST00000412727 736 ntBASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 AC023274.1-201ENST00000418278 595 ntBASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 AL671277.1-201ENST00000429656 993 ntBASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 RNA5SP410-201ENST00000516285 106 ntBASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 AC024267.1-201ENST00000582320 895 ntBASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 AC027601.4-201ENST00000611259 610 ntBASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 AC008267.7-201ENST00000624570 1194 ntBASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 AC092902.6-201ENST00000641783 218 ntBASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC16.52■□□□□ 0.24
ATG4AQ8WYN0 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms