Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
USP54Q70EL1 AC018695.7-201ENST00000624587 2492 ntBASIC20.68■□□□□ 0.9
USP54Q70EL1 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USP54Q70EL1 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USP54Q70EL1 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
USP54Q70EL1 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
USP54Q70EL1 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
USP54Q70EL1 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC20.67■□□□□ 0.9
USP54Q70EL1 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC20.67■□□□□ 0.9
USP54Q70EL1 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC20.67■□□□□ 0.9
USP54Q70EL1 BX284668.4-201ENST00000453917 508 ntBASIC20.67■□□□□ 0.9
USP54Q70EL1 SERPINA13P-202ENST00000478994 924 ntBASIC20.67■□□□□ 0.9
USP54Q70EL1 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC20.67■□□□□ 0.9
USP54Q70EL1 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC20.67■□□□□ 0.9
USP54Q70EL1 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC20.67■□□□□ 0.9
USP54Q70EL1 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC20.67■□□□□ 0.9
USP54Q70EL1 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
USP54Q70EL1 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC20.67■□□□□ 0.9
USP54Q70EL1 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC20.67■□□□□ 0.9
USP54Q70EL1 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC20.67■□□□□ 0.9
USP54Q70EL1 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC20.67■□□□□ 0.9
USP54Q70EL1 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP54Q70EL1 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP54Q70EL1 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP54Q70EL1 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP54Q70EL1 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP54Q70EL1 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP54Q70EL1 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP54Q70EL1 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC20.66■□□□□ 0.9
USP54Q70EL1 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC20.66■□□□□ 0.9
USP54Q70EL1 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC20.66■□□□□ 0.9
USP54Q70EL1 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP54Q70EL1 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP54Q70EL1 HNRNPA1P32-201ENST00000396326 963 ntBASIC20.66■□□□□ 0.9
USP54Q70EL1 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
USP54Q70EL1 GHSR-202ENST00000427970 912 ntBASIC20.66■□□□□ 0.9
USP54Q70EL1 AC013355.1-201ENST00000562625 723 ntBASIC20.66■□□□□ 0.9
USP54Q70EL1 AC004466.1-201ENST00000599515 1080 ntBASIC20.66■□□□□ 0.9
USP54Q70EL1 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC20.66■□□□□ 0.9
USP54Q70EL1 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP54Q70EL1 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP54Q70EL1 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP54Q70EL1 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP54Q70EL1 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP54Q70EL1 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC20.66■□□□□ 0.9
USP54Q70EL1 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP54Q70EL1 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.65■□□□□ 0.9
USP54Q70EL1 AC127383.1-201ENST00000444697 1800 ntBASIC20.65■□□□□ 0.9
USP54Q70EL1 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP54Q70EL1 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC20.65■□□□□ 0.9
USP54Q70EL1 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP54Q70EL1 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP54Q70EL1 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC20.65■□□□□ 0.9
USP54Q70EL1 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP54Q70EL1 DEF8-202ENST00000418391 852 ntTSL 2 BASIC20.65■□□□□ 0.9
USP54Q70EL1 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC20.65■□□□□ 0.9
USP54Q70EL1 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC20.65■□□□□ 0.9
USP54Q70EL1 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC20.65■□□□□ 0.9
USP54Q70EL1 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP54Q70EL1 RNF41-210ENST00000552244 716 ntTSL 3 BASIC20.65■□□□□ 0.9
USP54Q70EL1 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP54Q70EL1 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
USP54Q70EL1 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
USP54Q70EL1 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP54Q70EL1 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
USP54Q70EL1 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP54Q70EL1 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
USP54Q70EL1 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC20.64■□□□□ 0.9
USP54Q70EL1 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
USP54Q70EL1 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
USP54Q70EL1 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC20.64■□□□□ 0.9
USP54Q70EL1 ARTN-209ENST00000479128 471 ntTSL 3 BASIC20.64■□□□□ 0.9
USP54Q70EL1 AC022217.1-201ENST00000521069 738 ntBASIC20.64■□□□□ 0.9
USP54Q70EL1 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC20.64■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms