Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG3P49916 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
LIG3P49916 GRK6P1-201ENST00000400595 1711 ntBASIC16.84■□□□□ 0.29
LIG3P49916 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
LIG3P49916 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG3P49916 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG3P49916 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
LIG3P49916 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG3P49916 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC16.83■□□□□ 0.29
LIG3P49916 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.83■□□□□ 0.29
LIG3P49916 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG3P49916 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.83■□□□□ 0.28
LIG3P49916 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG3P49916 TUBB8P12-201ENST00000308911 1335 ntBASIC16.83■□□□□ 0.28
LIG3P49916 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIG3P49916 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG3P49916 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIG3P49916 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIG3P49916 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG3P49916 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC16.83■□□□□ 0.28
LIG3P49916 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG3P49916 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG3P49916 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG3P49916 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
LIG3P49916 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.83■□□□□ 0.28
LIG3P49916 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIG3P49916 TUBB7P-202ENST00000428444 1305 ntBASIC16.83■□□□□ 0.28
LIG3P49916 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.83■□□□□ 0.28
LIG3P49916 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.83■□□□□ 0.28
LIG3P49916 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.83■□□□□ 0.28
LIG3P49916 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIG3P49916 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.83■□□□□ 0.28
LIG3P49916 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.83■□□□□ 0.28
LIG3P49916 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.83■□□□□ 0.28
LIG3P49916 AC112191.1-201ENST00000523689 701 ntBASIC16.83■□□□□ 0.28
LIG3P49916 TUBB8P7-204ENST00000567960 1332 ntBASIC16.83■□□□□ 0.28
LIG3P49916 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG3P49916 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.83■□□□□ 0.28
LIG3P49916 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.83■□□□□ 0.28
LIG3P49916 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.83■□□□□ 0.28
LIG3P49916 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIG3P49916 AC131009.4-201ENST00000624048 1740 ntBASIC16.83■□□□□ 0.28
LIG3P49916 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC16.83■□□□□ 0.28
LIG3P49916 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.83■□□□□ 0.28
LIG3P49916 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG3P49916 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG3P49916 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG3P49916 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
LIG3P49916 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG3P49916 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC16.83■□□□□ 0.28
LIG3P49916 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG3P49916 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIG3P49916 AC005840.4-201ENST00000541242 2494 ntBASIC16.82■□□□□ 0.28
LIG3P49916 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
LIG3P49916 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
LIG3P49916 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.82■□□□□ 0.28
LIG3P49916 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.82■□□□□ 0.28
LIG3P49916 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
LIG3P49916 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.82■□□□□ 0.28
LIG3P49916 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
LIG3P49916 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.82■□□□□ 0.28
LIG3P49916 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
LIG3P49916 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC16.82■□□□□ 0.28
LIG3P49916 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.82■□□□□ 0.28
LIG3P49916 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.82■□□□□ 0.28
LIG3P49916 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
LIG3P49916 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.82■□□□□ 0.28
LIG3P49916 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.82■□□□□ 0.28
LIG3P49916 AC087641.1-201ENST00000557561 1021 ntBASIC16.82■□□□□ 0.28
LIG3P49916 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.82■□□□□ 0.28
LIG3P49916 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.82■□□□□ 0.28
LIG3P49916 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.82■□□□□ 0.28
LIG3P49916 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.82■□□□□ 0.28
LIG3P49916 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
LIG3P49916 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.82■□□□□ 0.28
LIG3P49916 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
LIG3P49916 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIG3P49916 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms