Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.05■□□□□ 0
SOX3P41225 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.05■□□□□ 0
SOX3P41225 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
SOX3P41225 AC013268.4-201ENST00000637413 2228 ntBASIC15.05■□□□□ 0
SOX3P41225 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.05■□□□□ 0
SOX3P41225 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.05■□□□□ 0
SOX3P41225 AC063926.3-201ENST00000624734 5658 ntBASIC15.05■□□□□ 0
SOX3P41225 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.05■□□□□ 0
SOX3P41225 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.05■□□□□ 0
SOX3P41225 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
SOX3P41225 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.05■□□□□ -0
SOX3P41225 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.05■□□□□ -0
SOX3P41225 BAD-202ENST00000394531 631 ntTSL 3 BASIC15.05■□□□□ -0
SOX3P41225 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.05■□□□□ -0
SOX3P41225 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.05■□□□□ -0
SOX3P41225 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.05■□□□□ -0
SOX3P41225 BAD-207ENST00000544785 525 ntTSL 3 BASIC15.05■□□□□ -0
SOX3P41225 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.05■□□□□ -0
SOX3P41225 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC15.05■□□□□ -0
SOX3P41225 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.05■□□□□ -0
SOX3P41225 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
SOX3P41225 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC15.05■□□□□ -0
SOX3P41225 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.05■□□□□ -0
SOX3P41225 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC15.05■□□□□ -0
SOX3P41225 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.05■□□□□ -0
SOX3P41225 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
SOX3P41225 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
SOX3P41225 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.05■□□□□ -0
SOX3P41225 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.05■□□□□ -0
SOX3P41225 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.05■□□□□ -0
SOX3P41225 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SOX3P41225 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.05■□□□□ -0
SOX3P41225 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SOX3P41225 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
SOX3P41225 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SOX3P41225 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SOX3P41225 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SOX3P41225 NORAD-201ENST00000565493 5339 ntBASIC15.05■□□□□ -0
SOX3P41225 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SOX3P41225 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
SOX3P41225 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SOX3P41225 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.04■□□□□ -0
SOX3P41225 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.04■□□□□ -0
SOX3P41225 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SOX3P41225 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SOX3P41225 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.04■□□□□ -0
SOX3P41225 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.04■□□□□ -0
SOX3P41225 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.04■□□□□ -0
SOX3P41225 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
SOX3P41225 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.04■□□□□ -0
SOX3P41225 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.04■□□□□ -0
SOX3P41225 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC15.04■□□□□ -0
SOX3P41225 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.04■□□□□ -0
SOX3P41225 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.04■□□□□ -0
SOX3P41225 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.04■□□□□ -0
SOX3P41225 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.04■□□□□ -0
SOX3P41225 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SOX3P41225 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SOX3P41225 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC15.04■□□□□ -0
SOX3P41225 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
SOX3P41225 MIR943-201ENST00000401286 94 ntBASIC15.04■□□□□ -0
SOX3P41225 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC15.04■□□□□ -0
SOX3P41225 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.04■□□□□ -0
SOX3P41225 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SOX3P41225 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.04■□□□□ -0
SOX3P41225 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.04■□□□□ -0
SOX3P41225 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.04■□□□□ -0
SOX3P41225 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15.04■□□□□ -0
SOX3P41225 AC140878.1-201ENST00000565277 250 ntBASIC15.04■□□□□ -0
SOX3P41225 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SOX3P41225 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.04■□□□□ -0
SOX3P41225 AC005498.2-205ENST00000593218 784 ntBASIC15.04■□□□□ -0
SOX3P41225 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
SOX3P41225 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SOX3P41225 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.04■□□□□ -0
SOX3P41225 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.04■□□□□ -0
SOX3P41225 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SOX3P41225 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.04■□□□□ -0
SOX3P41225 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.04■□□□□ -0
SOX3P41225 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SOX3P41225 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.03■□□□□ -0
SOX3P41225 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.03■□□□□ -0
SOX3P41225 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
SOX3P41225 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
SOX3P41225 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SOX3P41225 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SOX3P41225 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
SOX3P41225 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
SOX3P41225 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.03■□□□□ -0
SOX3P41225 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC15.03■□□□□ -0
SOX3P41225 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SOX3P41225 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.03■□□□□ -0
SOX3P41225 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SOX3P41225 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC15.03■□□□□ -0
SOX3P41225 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.03■□□□□ -0
SOX3P41225 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
SOX3P41225 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SOX3P41225 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
SOX3P41225 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SOX3P41225 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms