Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXD3P31249 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXD3P31249 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC12.34□□□□□ -0.43
HOXD3P31249 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXD3P31249 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXD3P31249 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HOXD3P31249 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXD3P31249 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXD3P31249 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HOXD3P31249 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXD3P31249 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC12.34□□□□□ -0.43
HOXD3P31249 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
HOXD3P31249 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HOXD3P31249 MIR648-201ENST00000385046 94 ntBASIC12.34□□□□□ -0.43
HOXD3P31249 AC004987.2-201ENST00000395959 1148 ntBASIC12.34□□□□□ -0.43
HOXD3P31249 OSM-203ENST00000403463 464 ntTSL 3 BASIC12.34□□□□□ -0.43
HOXD3P31249 PGF-202ENST00000405431 666 ntTSL 5 BASIC12.34□□□□□ -0.43
HOXD3P31249 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HOXD3P31249 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HOXD3P31249 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC12.34□□□□□ -0.43
HOXD3P31249 AL353779.1-201ENST00000434793 351 ntBASIC12.34□□□□□ -0.43
HOXD3P31249 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC12.34□□□□□ -0.43
HOXD3P31249 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC12.34□□□□□ -0.43
HOXD3P31249 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC12.34□□□□□ -0.43
HOXD3P31249 RN7SL618P-201ENST00000477850 296 ntBASIC12.34□□□□□ -0.43
HOXD3P31249 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC12.34□□□□□ -0.43
HOXD3P31249 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC12.34□□□□□ -0.43
HOXD3P31249 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
HOXD3P31249 IGHV3-71-201ENST00000523324 359 ntBASIC12.34□□□□□ -0.43
HOXD3P31249 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC12.34□□□□□ -0.43
HOXD3P31249 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HOXD3P31249 HILS1-202ENST00000545329 423 ntBASIC12.34□□□□□ -0.43
HOXD3P31249 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC12.34□□□□□ -0.43
HOXD3P31249 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC12.34□□□□□ -0.43
HOXD3P31249 PGR-209ENST00000617858 2816 ntTSL 5 BASIC12.34□□□□□ -0.43
HOXD3P31249 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC12.34□□□□□ -0.43
HOXD3P31249 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC12.34□□□□□ -0.43
HOXD3P31249 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXD3P31249 AL691432.1-201ENST00000596308 1422 ntBASIC12.34□□□□□ -0.43
HOXD3P31249 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC12.34□□□□□ -0.43
HOXD3P31249 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXD3P31249 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXD3P31249 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC12.34□□□□□ -0.43
HOXD3P31249 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
HOXD3P31249 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
HOXD3P31249 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
HOXD3P31249 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HOXD3P31249 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXD3P31249 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXD3P31249 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HOXD3P31249 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
HOXD3P31249 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC12.34□□□□□ -0.43
HOXD3P31249 AP001282.1-201ENST00000531301 1499 ntBASIC12.34□□□□□ -0.43
HOXD3P31249 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
HOXD3P31249 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC12.33□□□□□ -0.43
HOXD3P31249 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
HOXD3P31249 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXD3P31249 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXD3P31249 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
HOXD3P31249 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXD3P31249 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
HOXD3P31249 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC12.33□□□□□ -0.44
HOXD3P31249 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXD3P31249 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXD3P31249 KRT8P12-202ENST00000472924 1397 ntBASIC12.33□□□□□ -0.44
HOXD3P31249 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXD3P31249 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXD3P31249 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXD3P31249 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
HOXD3P31249 MIR600HG-201ENST00000449175 5984 ntBASIC12.33□□□□□ -0.44
HOXD3P31249 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXD3P31249 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HOXD3P31249 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC12.33□□□□□ -0.44
HOXD3P31249 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC12.33□□□□□ -0.44
HOXD3P31249 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
HOXD3P31249 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXD3P31249 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC12.33□□□□□ -0.44
HOXD3P31249 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXD3P31249 SPDYE19P-201ENST00000338590 713 ntBASIC12.33□□□□□ -0.44
HOXD3P31249 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HOXD3P31249 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HOXD3P31249 DGCR5-201ENST00000399539 862 ntBASIC12.33□□□□□ -0.44
HOXD3P31249 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC12.33□□□□□ -0.44
HOXD3P31249 SPDYE17-201ENST00000412399 783 ntBASIC12.33□□□□□ -0.44
HOXD3P31249 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC12.33□□□□□ -0.44
HOXD3P31249 GPR53P-205ENST00000457298 1084 ntBASIC12.33□□□□□ -0.44
HOXD3P31249 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HOXD3P31249 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXD3P31249 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HOXD3P31249 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC12.33□□□□□ -0.44
HOXD3P31249 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC12.33□□□□□ -0.44
HOXD3P31249 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HOXD3P31249 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXD3P31249 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HOXD3P31249 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC12.33□□□□□ -0.44
HOXD3P31249 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXD3P31249 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HOXD3P31249 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC12.33□□□□□ -0.44
HOXD3P31249 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HOXD3P31249 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms