Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
COL8A1P27658 FO393414.2-201ENST00000405153 598 ntBASIC13.88□□□□□ -0.19
COL8A1P27658 RPL17P11-201ENST00000417593 544 ntBASIC13.88□□□□□ -0.19
COL8A1P27658 PTPA-217ENST00000434095 870 ntTSL 2 BASIC13.88□□□□□ -0.19
COL8A1P27658 BX284668.4-201ENST00000453917 508 ntBASIC13.88□□□□□ -0.19
COL8A1P27658 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC13.88□□□□□ -0.19
COL8A1P27658 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
COL8A1P27658 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC13.88□□□□□ -0.19
COL8A1P27658 AC009486.1-201ENST00000569860 813 ntBASIC13.88□□□□□ -0.19
COL8A1P27658 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC13.88□□□□□ -0.19
COL8A1P27658 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC13.88□□□□□ -0.19
COL8A1P27658 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL8A1P27658 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
COL8A1P27658 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC13.88□□□□□ -0.19
COL8A1P27658 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL8A1P27658 KRT8P39-201ENST00000396270 1433 ntBASIC13.88□□□□□ -0.19
COL8A1P27658 AC084018.2-201ENST00000613093 2607 ntBASIC13.88□□□□□ -0.19
COL8A1P27658 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
COL8A1P27658 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL8A1P27658 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL8A1P27658 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC13.87□□□□□ -0.19
COL8A1P27658 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
COL8A1P27658 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC13.87□□□□□ -0.19
COL8A1P27658 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC13.87□□□□□ -0.19
COL8A1P27658 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
COL8A1P27658 RERG-209ENST00000546331 1383 ntTSL 2 BASIC13.87□□□□□ -0.19
COL8A1P27658 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
COL8A1P27658 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 SNX33P1-201ENST00000592116 1762 ntBASIC13.87□□□□□ -0.19
COL8A1P27658 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
COL8A1P27658 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC13.87□□□□□ -0.19
COL8A1P27658 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
COL8A1P27658 C1QBPP1-201ENST00000400117 770 ntBASIC13.87□□□□□ -0.19
COL8A1P27658 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
COL8A1P27658 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
COL8A1P27658 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC13.87□□□□□ -0.19
COL8A1P27658 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 C2orf27AP3-201ENST00000434123 579 ntBASIC13.87□□□□□ -0.19
COL8A1P27658 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC13.87□□□□□ -0.19
COL8A1P27658 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC13.87□□□□□ -0.19
COL8A1P27658 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC13.87□□□□□ -0.19
COL8A1P27658 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC13.87□□□□□ -0.19
COL8A1P27658 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC13.87□□□□□ -0.19
COL8A1P27658 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC13.87□□□□□ -0.19
COL8A1P27658 AP006547.1-201ENST00000563435 692 ntBASIC13.87□□□□□ -0.19
COL8A1P27658 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 AC026740.1-201ENST00000607068 791 ntBASIC13.87□□□□□ -0.19
COL8A1P27658 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
COL8A1P27658 AL354718.3-201ENST00000616414 581 ntBASIC13.87□□□□□ -0.19
COL8A1P27658 CR382287.1-201ENST00000623954 586 ntBASIC13.87□□□□□ -0.19
COL8A1P27658 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC13.87□□□□□ -0.19
COL8A1P27658 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC13.87□□□□□ -0.19
COL8A1P27658 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 AC133963.1-201ENST00000504166 1679 ntBASIC13.87□□□□□ -0.19
COL8A1P27658 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC13.87□□□□□ -0.19
COL8A1P27658 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
COL8A1P27658 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC13.87□□□□□ -0.19
COL8A1P27658 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC13.87□□□□□ -0.19
COL8A1P27658 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL8A1P27658 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC13.86□□□□□ -0.19
COL8A1P27658 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC13.86□□□□□ -0.19
COL8A1P27658 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC13.86□□□□□ -0.19
COL8A1P27658 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC13.86□□□□□ -0.19
COL8A1P27658 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
COL8A1P27658 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
COL8A1P27658 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
COL8A1P27658 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC13.86□□□□□ -0.19
COL8A1P27658 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL8A1P27658 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms