Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.32■□□□□ 0.04
SEMA3DO95025 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.32■□□□□ 0.04
SEMA3DO95025 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
SEMA3DO95025 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.32■□□□□ 0.04
SEMA3DO95025 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SEMA3DO95025 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.32■□□□□ 0.04
SEMA3DO95025 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.32■□□□□ 0.04
SEMA3DO95025 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC15.32■□□□□ 0.04
SEMA3DO95025 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.32■□□□□ 0.04
SEMA3DO95025 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
SEMA3DO95025 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
SEMA3DO95025 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
SEMA3DO95025 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SEMA3DO95025 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SEMA3DO95025 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.32■□□□□ 0.04
SEMA3DO95025 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SEMA3DO95025 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.32■□□□□ 0.04
SEMA3DO95025 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SEMA3DO95025 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SEMA3DO95025 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SEMA3DO95025 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SEMA3DO95025 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
SEMA3DO95025 BNIP3P1-202ENST00000550043 1585 ntBASIC15.32■□□□□ 0.04
SEMA3DO95025 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC15.32■□□□□ 0.04
SEMA3DO95025 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SEMA3DO95025 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
SEMA3DO95025 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.31■□□□□ 0.04
SEMA3DO95025 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
SEMA3DO95025 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.31■□□□□ 0.04
SEMA3DO95025 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
SEMA3DO95025 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.31■□□□□ 0.04
SEMA3DO95025 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.31■□□□□ 0.04
SEMA3DO95025 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SEMA3DO95025 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SEMA3DO95025 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.31■□□□□ 0.04
SEMA3DO95025 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SEMA3DO95025 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
SEMA3DO95025 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
SEMA3DO95025 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.31■□□□□ 0.04
SEMA3DO95025 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SEMA3DO95025 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SEMA3DO95025 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
SEMA3DO95025 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
SEMA3DO95025 AC211486.1-202ENST00000416371 468 ntBASIC15.31■□□□□ 0.04
SEMA3DO95025 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC15.31■□□□□ 0.04
SEMA3DO95025 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.31■□□□□ 0.04
SEMA3DO95025 AC211476.1-201ENST00000503899 468 ntBASIC15.31■□□□□ 0.04
SEMA3DO95025 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC15.31■□□□□ 0.04
SEMA3DO95025 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.31■□□□□ 0.04
SEMA3DO95025 ALG1L8P-201ENST00000533887 760 ntBASIC15.31■□□□□ 0.04
SEMA3DO95025 AC093520.2-201ENST00000561830 333 ntBASIC15.31■□□□□ 0.04
SEMA3DO95025 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC15.31■□□□□ 0.04
SEMA3DO95025 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC15.31■□□□□ 0.04
SEMA3DO95025 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC15.31■□□□□ 0.04
SEMA3DO95025 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SEMA3DO95025 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SEMA3DO95025 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SEMA3DO95025 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.31■□□□□ 0.04
SEMA3DO95025 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SEMA3DO95025 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SEMA3DO95025 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SEMA3DO95025 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SEMA3DO95025 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SEMA3DO95025 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.31■□□□□ 0.04
SEMA3DO95025 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SEMA3DO95025 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
SEMA3DO95025 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.31■□□□□ 0.04
SEMA3DO95025 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
SEMA3DO95025 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SEMA3DO95025 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
SEMA3DO95025 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
SEMA3DO95025 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
SEMA3DO95025 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SEMA3DO95025 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SEMA3DO95025 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SEMA3DO95025 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SEMA3DO95025 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SEMA3DO95025 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
SEMA3DO95025 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SEMA3DO95025 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SEMA3DO95025 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
SEMA3DO95025 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SEMA3DO95025 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SEMA3DO95025 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SEMA3DO95025 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
SEMA3DO95025 AL353705.2-201ENST00000428243 662 ntBASIC15.3■□□□□ 0.04
SEMA3DO95025 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SEMA3DO95025 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.3■□□□□ 0.04
SEMA3DO95025 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.3■□□□□ 0.04
SEMA3DO95025 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SEMA3DO95025 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC15.3■□□□□ 0.04
SEMA3DO95025 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
SEMA3DO95025 CYP4F24P-201ENST00000586049 1580 ntBASIC15.3■□□□□ 0.04
SEMA3DO95025 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
SEMA3DO95025 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.3■□□□□ 0.04
SEMA3DO95025 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.3■□□□□ 0.04
SEMA3DO95025 AC009093.7-201ENST00000623853 1223 ntBASIC15.3■□□□□ 0.04
SEMA3DO95025 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SEMA3DO95025 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
SEMA3DO95025 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms