Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
TRIM38O00635 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
TRIM38O00635 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.09■□□□□ 0.17
TRIM38O00635 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.09■□□□□ 0.17
TRIM38O00635 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM38O00635 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
TRIM38O00635 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
TRIM38O00635 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.08■□□□□ 0.17
TRIM38O00635 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
TRIM38O00635 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.08■□□□□ 0.17
TRIM38O00635 AC010491.1-201ENST00000563101 2797 ntBASIC16.08■□□□□ 0.16
TRIM38O00635 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
TRIM38O00635 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM38O00635 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM38O00635 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM38O00635 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM38O00635 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
TRIM38O00635 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC16.08■□□□□ 0.16
TRIM38O00635 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.08■□□□□ 0.16
TRIM38O00635 NME2P1-201ENST00000426182 414 ntBASIC16.08■□□□□ 0.16
TRIM38O00635 AL353705.2-201ENST00000428243 662 ntBASIC16.08■□□□□ 0.16
TRIM38O00635 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC16.08■□□□□ 0.16
TRIM38O00635 MTND6P24-201ENST00000440466 518 ntBASIC16.08■□□□□ 0.16
TRIM38O00635 AC009477.1-201ENST00000452936 217 ntBASIC16.08■□□□□ 0.16
TRIM38O00635 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM38O00635 RN7SL692P-201ENST00000464677 288 ntBASIC16.08■□□□□ 0.16
TRIM38O00635 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC16.08■□□□□ 0.16
TRIM38O00635 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
TRIM38O00635 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.08■□□□□ 0.16
TRIM38O00635 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.08■□□□□ 0.16
TRIM38O00635 CR383656.12-201ENST00000549567 513 ntBASIC16.08■□□□□ 0.16
TRIM38O00635 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM38O00635 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.08■□□□□ 0.16
TRIM38O00635 AC009407.1-201ENST00000568958 598 ntBASIC16.08■□□□□ 0.16
TRIM38O00635 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.08■□□□□ 0.16
TRIM38O00635 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM38O00635 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM38O00635 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM38O00635 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.08■□□□□ 0.16
TRIM38O00635 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM38O00635 AL035456.1-201ENST00000456064 1369 ntBASIC16.08■□□□□ 0.16
TRIM38O00635 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM38O00635 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM38O00635 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM38O00635 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.08■□□□□ 0.16
TRIM38O00635 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM38O00635 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM38O00635 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM38O00635 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM38O00635 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
TRIM38O00635 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM38O00635 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM38O00635 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
TRIM38O00635 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
TRIM38O00635 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM38O00635 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.07■□□□□ 0.16
TRIM38O00635 FAM220BP-201ENST00000377689 816 ntBASIC16.07■□□□□ 0.16
TRIM38O00635 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC16.07■□□□□ 0.16
TRIM38O00635 RPL37AP1-201ENST00000412502 279 ntBASIC16.07■□□□□ 0.16
TRIM38O00635 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.07■□□□□ 0.16
TRIM38O00635 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC16.07■□□□□ 0.16
TRIM38O00635 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM38O00635 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM38O00635 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
TRIM38O00635 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC16.07■□□□□ 0.16
TRIM38O00635 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC16.07■□□□□ 0.16
TRIM38O00635 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.07■□□□□ 0.16
TRIM38O00635 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.07■□□□□ 0.16
TRIM38O00635 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC16.07■□□□□ 0.16
TRIM38O00635 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.07■□□□□ 0.16
TRIM38O00635 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.07■□□□□ 0.16
TRIM38O00635 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM38O00635 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM38O00635 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.07■□□□□ 0.16
TRIM38O00635 AC008738.7-201ENST00000609744 511 ntBASIC16.07■□□□□ 0.16
TRIM38O00635 TEX28P1-201ENST00000613479 1221 ntBASIC16.07■□□□□ 0.16
TRIM38O00635 TEX28P2-201ENST00000617764 1221 ntBASIC16.07■□□□□ 0.16
TRIM38O00635 SRP9-204ENST00000619790 377 ntTSL 2 BASIC16.07■□□□□ 0.16
TRIM38O00635 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
TRIM38O00635 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.07■□□□□ 0.16
TRIM38O00635 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM38O00635 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
TRIM38O00635 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM38O00635 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM38O00635 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM38O00635 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM38O00635 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM38O00635 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.07■□□□□ 0.16
TRIM38O00635 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM38O00635 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM38O00635 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.07■□□□□ 0.16
TRIM38O00635 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM38O00635 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM38O00635 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms