Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM49D1C9J1S8 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM49D1C9J1S8 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 RNA5SP415-201ENST00000517246 115 ntBASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM49D1C9J1S8 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 GOLGA2P9-201ENST00000596977 1937 ntBASIC16■□□□□ 0.15
TRIM49D1C9J1S8 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 PARN-202ENST00000420015 2360 ntTSL 2 BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 AC025580.3-201ENST00000617932 1424 ntBASIC16■□□□□ 0.15
TRIM49D1C9J1S8 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM49D1C9J1S8 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.99■□□□□ 0.15
TRIM49D1C9J1S8 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM49D1C9J1S8 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRIM49D1C9J1S8 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms