Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 TPM4P1-201ENST00000436100 807 ntBASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 RNA5SP416-201ENST00000516838 111 ntBASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 FAM86C2P-203ENST00000528684 1004 ntBASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 AP000842.3-202ENST00000569238 1080 ntBASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 AC092902.6-201ENST00000641783 218 ntBASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC17.41■□□□□ 0.38
LIMA1Q9UHB6 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 AP002414.2-201ENST00000591780 3365 ntBASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 KLK8-202ENST00000320838 456 ntTSL 5 BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 AL591424.1-201ENST00000442569 1213 ntBASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 AL139010.1-201ENST00000454878 894 ntBASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 MARS-233ENST00000628866 2583 ntTSL 5 BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 ZNF259P1-201ENST00000407656 1365 ntBASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMA1Q9UHB6 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
LIMA1Q9UHB6 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC17.39■□□□□ 0.38
LIMA1Q9UHB6 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
LIMA1Q9UHB6 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 SPCS2P4-201ENST00000436160 681 ntBASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 KRT18P3-201ENST00000451602 1288 ntBASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 HNRNPUP1-201ENST00000554987 333 ntBASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 AC140113.2-201ENST00000604370 208 ntBASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
LIMA1Q9UHB6 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms