Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
CNTN3Q9P232 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CNTN3Q9P232 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CNTN3Q9P232 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
CNTN3Q9P232 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.07■□□□□ 0.32
CNTN3Q9P232 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CNTN3Q9P232 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CNTN3Q9P232 AC098614.1-201ENST00000368528 745 ntBASIC17.07■□□□□ 0.32
CNTN3Q9P232 PKIG-203ENST00000372887 769 ntTSL 3 BASIC17.07■□□□□ 0.32
CNTN3Q9P232 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CNTN3Q9P232 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
CNTN3Q9P232 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC17.07■□□□□ 0.32
CNTN3Q9P232 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC17.07■□□□□ 0.32
CNTN3Q9P232 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC17.07■□□□□ 0.32
CNTN3Q9P232 ELK1P1-201ENST00000485699 580 ntBASIC17.07■□□□□ 0.32
CNTN3Q9P232 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC17.07■□□□□ 0.32
CNTN3Q9P232 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC17.07■□□□□ 0.32
CNTN3Q9P232 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC17.07■□□□□ 0.32
CNTN3Q9P232 MIR4313-201ENST00000580760 101 ntBASIC17.07■□□□□ 0.32
CNTN3Q9P232 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CNTN3Q9P232 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CNTN3Q9P232 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CNTN3Q9P232 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CNTN3Q9P232 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CNTN3Q9P232 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CNTN3Q9P232 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC17.07■□□□□ 0.32
CNTN3Q9P232 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CNTN3Q9P232 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.07■□□□□ 0.32
CNTN3Q9P232 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC17.06■□□□□ 0.32
CNTN3Q9P232 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC17.06■□□□□ 0.32
CNTN3Q9P232 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CNTN3Q9P232 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CNTN3Q9P232 AC138969.3-201ENST00000546612 1459 ntBASIC17.06■□□□□ 0.32
CNTN3Q9P232 AC138932.2-201ENST00000548268 1459 ntBASIC17.06■□□□□ 0.32
CNTN3Q9P232 AC126755.4-201ENST00000549796 1459 ntBASIC17.06■□□□□ 0.32
CNTN3Q9P232 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
CNTN3Q9P232 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CNTN3Q9P232 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CNTN3Q9P232 CU639417.3-201ENST00000624240 1404 ntBASIC17.06■□□□□ 0.32
CNTN3Q9P232 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.06■□□□□ 0.32
CNTN3Q9P232 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
CNTN3Q9P232 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CNTN3Q9P232 AC063926.2-201ENST00000623766 1308 ntBASIC17.06■□□□□ 0.32
CNTN3Q9P232 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CNTN3Q9P232 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CNTN3Q9P232 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC17.06■□□□□ 0.32
CNTN3Q9P232 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CNTN3Q9P232 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC17.06■□□□□ 0.32
CNTN3Q9P232 CMC2-214ENST00000565925 640 ntTSL 5 BASIC17.06■□□□□ 0.32
CNTN3Q9P232 AC036164.1-201ENST00000570544 333 ntBASIC17.06■□□□□ 0.32
CNTN3Q9P232 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC17.06■□□□□ 0.32
CNTN3Q9P232 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC17.06■□□□□ 0.32
CNTN3Q9P232 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC17.06■□□□□ 0.32
CNTN3Q9P232 AC239800.4-201ENST00000603712 296 ntBASIC17.06■□□□□ 0.32
CNTN3Q9P232 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC17.06■□□□□ 0.32
CNTN3Q9P232 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CNTN3Q9P232 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC17.06■□□□□ 0.32
CNTN3Q9P232 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CNTN3Q9P232 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CNTN3Q9P232 AC024909.3-201ENST00000611513 2257 ntBASIC17.06■□□□□ 0.32
CNTN3Q9P232 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.06■□□□□ 0.32
CNTN3Q9P232 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.06■□□□□ 0.32
CNTN3Q9P232 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CNTN3Q9P232 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CNTN3Q9P232 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CNTN3Q9P232 CLK3P2-201ENST00000427566 1453 ntBASIC17.05■□□□□ 0.32
CNTN3Q9P232 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
CNTN3Q9P232 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CNTN3Q9P232 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
CNTN3Q9P232 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC17.05■□□□□ 0.32
CNTN3Q9P232 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CNTN3Q9P232 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
CNTN3Q9P232 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CNTN3Q9P232 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CNTN3Q9P232 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CNTN3Q9P232 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CNTN3Q9P232 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CNTN3Q9P232 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CNTN3Q9P232 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CNTN3Q9P232 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
CNTN3Q9P232 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CNTN3Q9P232 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CNTN3Q9P232 RN7SL399P-201ENST00000471648 279 ntBASIC17.05■□□□□ 0.32
CNTN3Q9P232 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CNTN3Q9P232 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC17.05■□□□□ 0.32
CNTN3Q9P232 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC17.05■□□□□ 0.32
CNTN3Q9P232 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC17.05■□□□□ 0.32
CNTN3Q9P232 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CNTN3Q9P232 CTBP2P3-201ENST00000585629 1255 ntBASIC17.05■□□□□ 0.32
CNTN3Q9P232 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC17.05■□□□□ 0.32
CNTN3Q9P232 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC17.05■□□□□ 0.32
CNTN3Q9P232 TMEM261P1-201ENST00000604899 340 ntBASIC17.05■□□□□ 0.32
CNTN3Q9P232 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC17.05■□□□□ 0.32
CNTN3Q9P232 MIR8072-201ENST00000614241 80 ntBASIC17.05■□□□□ 0.32
CNTN3Q9P232 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC17.05■□□□□ 0.32
CNTN3Q9P232 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CNTN3Q9P232 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CNTN3Q9P232 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CNTN3Q9P232 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CNTN3Q9P232 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms