Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AF238378.1-201ENST00000526806 358 ntBASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 AC105339.3-201ENST00000560043 636 ntBASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 AC002347.1-201ENST00000569543 541 ntBASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 AC093458.2-201ENST00000623150 629 ntBASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 AC005593.1-201ENST00000624894 515 ntBASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 AC013726.1-201ENST00000563747 2285 ntBASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 AL078644.1-201ENST00000609881 752 ntBASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 AC091951.1-201ENST00000512854 2465 ntBASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 AGAP7P-201ENST00000582299 2062 ntBASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 AGAP14-201ENST00000624701 2060 ntBASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.55■□□□□ 0.08
CCDC28BQ9BUN5 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms