Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 RPL28-205ENST00000558131 444 ntTSL 5 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 PRR29-209ENST00000582540 967 ntTSL 2 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 COQ4-205ENST00000609948 956 ntTSL 2 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 SPDYE12P-201ENST00000618416 771 ntBASIC12.33□□□□□ -0.44
CCDC140Q96MF4 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 AC092127.1-201ENST00000567093 3455 ntBASIC12.33□□□□□ -0.44
CCDC140Q96MF4 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 FER1L4-210ENST00000615531 5998 ntBASIC12.33□□□□□ -0.44
CCDC140Q96MF4 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 KRT18P28-201ENST00000453838 1332 ntBASIC12.33□□□□□ -0.44
CCDC140Q96MF4 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 GRAMD4P3-201ENST00000621665 1669 ntBASIC12.32□□□□□ -0.44
CCDC140Q96MF4 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 APOBEC3H-201ENST00000348946 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 FAM86GP-201ENST00000448322 971 ntBASIC12.32□□□□□ -0.44
CCDC140Q96MF4 KLF2P3-201ENST00000451977 1087 ntBASIC12.32□□□□□ -0.44
CCDC140Q96MF4 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 AC051619.7-201ENST00000568314 623 ntBASIC12.32□□□□□ -0.44
CCDC140Q96MF4 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 GPER1-207ENST00000619052 571 ntTSL 2 BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
CCDC140Q96MF4 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms