Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 AL138828.2-201ENST00000615812 383 ntBASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 PGR-209ENST00000617858 2816 ntTSL 5 BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 MYB-242ENST00000618728 3545 ntTSL 5 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 AL512638.1-201ENST00000457493 794 ntBASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 MAX-210ENST00000555419 765 ntTSL 5 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 AC024267.1-201ENST00000582320 895 ntBASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 AP005117.1-202ENST00000581724 1908 ntBASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
CHMP4CQ96CF2 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 AP001282.1-201ENST00000531301 1499 ntBASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 AC011477.6-201ENST00000604980 1927 ntBASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 AC236430.1-201ENST00000402231 743 ntBASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 RAC2-204ENST00000406508 893 ntTSL 5 BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 AC105021.1-202ENST00000570572 669 ntBASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 AC007967.4-201ENST00000614700 386 ntBASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4CQ96CF2 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
CHMP4CQ96CF2 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms