Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 MIR4313-201ENST00000580760 101 ntBASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 AC091812.2-201ENST00000619081 385 ntBASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 REXO1L1P-202ENST00000608646 1974 ntBASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 MED15P5-201ENST00000423150 992 ntBASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 AC142381.1-201ENST00000426099 345 ntBASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 RNA5SP416-201ENST00000516838 111 ntBASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 AC243562.2-201ENST00000561247 970 ntBASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 AC027307.2-201ENST00000591252 911 ntBASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 AL136982.4-201ENST00000437689 1740 ntBASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
ATG4AQ8WYN0 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 ZNF259P1-201ENST00000407656 1365 ntBASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 KRT18P3-201ENST00000451602 1288 ntBASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 AL121894.2-201ENST00000602977 491 ntBASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
ATG4AQ8WYN0 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms