Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 HIST3H2BA-201ENST00000436555 524 ntBASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 ATP5G2P4-201ENST00000442175 420 ntBASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 AC004890.2-204ENST00000481968 304 ntBASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 CR383656.12-201ENST00000549567 513 ntBASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 AC011477.6-201ENST00000604980 1927 ntBASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SHROOM3Q8TF72 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 OR6D1P-202ENST00000641007 5290 ntBASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 HCG11-201ENST00000411553 5696 ntBASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 TMBIM7P-203ENST00000641617 1718 ntBASIC16.19■□□□□ 0.18
SHROOM3Q8TF72 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 GOLGA6L11P-201ENST00000417252 1298 ntBASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 AC241585.1-201ENST00000433527 519 ntBASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 AL158211.3-201ENST00000607385 239 ntBASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 AC144831.1-201ENST00000573312 2656 ntBASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 AL035456.1-201ENST00000456064 1369 ntBASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 AL607033.1-201ENST00000623900 1599 ntBASIC16.18■□□□□ 0.18
SHROOM3Q8TF72 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms