Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
SKA3Q8IX90 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SKA3Q8IX90 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SKA3Q8IX90 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
SKA3Q8IX90 AC010491.1-201ENST00000563101 2797 ntBASIC14.17□□□□□ -0.14
SKA3Q8IX90 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SKA3Q8IX90 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SKA3Q8IX90 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SKA3Q8IX90 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SKA3Q8IX90 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
SKA3Q8IX90 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SKA3Q8IX90 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC14.17□□□□□ -0.14
SKA3Q8IX90 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.17□□□□□ -0.14
SKA3Q8IX90 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC14.17□□□□□ -0.14
SKA3Q8IX90 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SKA3Q8IX90 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SKA3Q8IX90 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC14.17□□□□□ -0.14
SKA3Q8IX90 AC126177.1-201ENST00000547829 2218 ntBASIC14.17□□□□□ -0.14
SKA3Q8IX90 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SKA3Q8IX90 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
SKA3Q8IX90 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SKA3Q8IX90 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SKA3Q8IX90 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
SKA3Q8IX90 HLA-J-203ENST00000494367 1087 ntBASIC14.17□□□□□ -0.14
SKA3Q8IX90 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC14.17□□□□□ -0.14
SKA3Q8IX90 AC018529.1-201ENST00000613063 361 ntBASIC14.17□□□□□ -0.14
SKA3Q8IX90 LINC00628-201ENST00000628516 1289 ntBASIC14.17□□□□□ -0.14
SKA3Q8IX90 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SKA3Q8IX90 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SKA3Q8IX90 CDC14C-201ENST00000428251 1719 ntBASIC14.17□□□□□ -0.14
SKA3Q8IX90 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC14.17□□□□□ -0.14
SKA3Q8IX90 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SKA3Q8IX90 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
SKA3Q8IX90 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SKA3Q8IX90 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SKA3Q8IX90 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SKA3Q8IX90 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC14.17□□□□□ -0.14
SKA3Q8IX90 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
SKA3Q8IX90 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SKA3Q8IX90 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SKA3Q8IX90 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
SKA3Q8IX90 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SKA3Q8IX90 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
SKA3Q8IX90 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SKA3Q8IX90 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SKA3Q8IX90 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SKA3Q8IX90 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SKA3Q8IX90 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SKA3Q8IX90 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.16□□□□□ -0.14
SKA3Q8IX90 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
SKA3Q8IX90 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SKA3Q8IX90 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SKA3Q8IX90 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SKA3Q8IX90 AL139400.1-201ENST00000366220 510 ntBASIC14.16□□□□□ -0.14
SKA3Q8IX90 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SKA3Q8IX90 TSEN15P1-201ENST00000423257 515 ntBASIC14.16□□□□□ -0.14
SKA3Q8IX90 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC14.16□□□□□ -0.14
SKA3Q8IX90 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC14.16□□□□□ -0.14
SKA3Q8IX90 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC14.16□□□□□ -0.14
SKA3Q8IX90 LINC02447-202ENST00000501888 2146 ntBASIC14.16□□□□□ -0.14
SKA3Q8IX90 AC109322.1-201ENST00000524499 1264 ntBASIC14.16□□□□□ -0.14
SKA3Q8IX90 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC14.16□□□□□ -0.14
SKA3Q8IX90 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC14.16□□□□□ -0.14
SKA3Q8IX90 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
SKA3Q8IX90 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC14.16□□□□□ -0.14
SKA3Q8IX90 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC14.16□□□□□ -0.14
SKA3Q8IX90 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC14.16□□□□□ -0.14
SKA3Q8IX90 GPALPP1-207ENST00000611650 899 ntBASIC14.16□□□□□ -0.14
SKA3Q8IX90 AC003101.2-201ENST00000612557 442 ntBASIC14.16□□□□□ -0.14
SKA3Q8IX90 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SKA3Q8IX90 AP001059.3-201ENST00000619053 235 ntBASIC14.16□□□□□ -0.14
SKA3Q8IX90 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC14.16□□□□□ -0.14
SKA3Q8IX90 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SKA3Q8IX90 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC14.16□□□□□ -0.14
SKA3Q8IX90 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC14.16□□□□□ -0.14
SKA3Q8IX90 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC14.16□□□□□ -0.14
SKA3Q8IX90 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SKA3Q8IX90 SUPT20HL2-201ENST00000486479 2409 ntBASIC14.16□□□□□ -0.14
SKA3Q8IX90 AC008677.1-201ENST00000519230 1561 ntBASIC14.16□□□□□ -0.14
SKA3Q8IX90 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.16□□□□□ -0.14
SKA3Q8IX90 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SKA3Q8IX90 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.16□□□□□ -0.14
SKA3Q8IX90 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SKA3Q8IX90 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SKA3Q8IX90 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SKA3Q8IX90 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SKA3Q8IX90 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 AC069224.1-201ENST00000566372 1715 ntBASIC14.15□□□□□ -0.14
SKA3Q8IX90 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SKA3Q8IX90 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SKA3Q8IX90 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SKA3Q8IX90 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SKA3Q8IX90 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SKA3Q8IX90 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.15□□□□□ -0.14
SKA3Q8IX90 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SKA3Q8IX90 GOLGA8DP-202ENST00000341390 2184 ntBASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms