Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
SCUBE3Q8IX30 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SCUBE3Q8IX30 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SCUBE3Q8IX30 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SCUBE3Q8IX30 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.77■□□□□ 0.28
SCUBE3Q8IX30 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
SCUBE3Q8IX30 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
SCUBE3Q8IX30 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SCUBE3Q8IX30 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.77■□□□□ 0.27
SCUBE3Q8IX30 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
SCUBE3Q8IX30 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SCUBE3Q8IX30 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.27
SCUBE3Q8IX30 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
SCUBE3Q8IX30 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.27
SCUBE3Q8IX30 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
SCUBE3Q8IX30 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SCUBE3Q8IX30 HYMAI-201ENST00000635591 3347 ntBASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 AL139384.1-201ENST00000612143 3047 ntBASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 AC241585.1-201ENST00000433527 519 ntBASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 TNFRSF10A-AS1-201ENST00000518308 637 ntTSL 3 BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 MTND2P7-201ENST00000521337 640 ntBASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 AC006213.4-201ENST00000616184 634 ntBASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 MIR6069-201ENST00000620069 79 ntBASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.76■□□□□ 0.27
SCUBE3Q8IX30 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 AC087499.5-201ENST00000452760 1342 ntBASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 TSSK5P-201ENST00000423978 907 ntBASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 AL512361.1-201ENST00000554200 418 ntBASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 AL035252.4-201ENST00000624174 288 ntBASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SCUBE3Q8IX30 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms