Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP54Q70EL1 ILF3-AS1-201ENST00000591501 1983 ntBASIC20.72■□□□□ 0.91
USP54Q70EL1 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP54Q70EL1 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP54Q70EL1 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP54Q70EL1 AC015818.8-201ENST00000587907 1519 ntBASIC20.72■□□□□ 0.91
USP54Q70EL1 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP54Q70EL1 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP54Q70EL1 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC20.71■□□□□ 0.91
USP54Q70EL1 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC20.71■□□□□ 0.91
USP54Q70EL1 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC20.71■□□□□ 0.91
USP54Q70EL1 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP54Q70EL1 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP54Q70EL1 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP54Q70EL1 MPV17-205ENST00000402310 906 ntTSL 5 BASIC20.71■□□□□ 0.91
USP54Q70EL1 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC20.71■□□□□ 0.91
USP54Q70EL1 POM121L10P-201ENST00000436994 1285 ntBASIC20.71■□□□□ 0.91
USP54Q70EL1 SDHD-202ENST00000525291 790 ntTSL 3 BASIC20.71■□□□□ 0.91
USP54Q70EL1 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC20.71■□□□□ 0.91
USP54Q70EL1 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC20.71■□□□□ 0.91
USP54Q70EL1 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC20.71■□□□□ 0.91
USP54Q70EL1 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC20.71■□□□□ 0.91
USP54Q70EL1 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP54Q70EL1 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC20.71■□□□□ 0.91
USP54Q70EL1 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP54Q70EL1 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP54Q70EL1 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC20.71■□□□□ 0.91
USP54Q70EL1 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP54Q70EL1 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC20.71■□□□□ 0.91
USP54Q70EL1 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP54Q70EL1 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP54Q70EL1 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC20.71■□□□□ 0.91
USP54Q70EL1 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP54Q70EL1 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP54Q70EL1 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
USP54Q70EL1 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
USP54Q70EL1 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
USP54Q70EL1 HIST2H2BC-201ENST00000498492 580 ntBASIC20.7■□□□□ 0.91
USP54Q70EL1 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC20.7■□□□□ 0.91
USP54Q70EL1 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
USP54Q70EL1 MIR4783-201ENST00000580343 82 ntBASIC20.7■□□□□ 0.91
USP54Q70EL1 AL022328.3-201ENST00000607943 679 ntBASIC20.7■□□□□ 0.91
USP54Q70EL1 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.91
USP54Q70EL1 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC20.7■□□□□ 0.91
USP54Q70EL1 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
USP54Q70EL1 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP54Q70EL1 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP54Q70EL1 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC20.7■□□□□ 0.9
USP54Q70EL1 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP54Q70EL1 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP54Q70EL1 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP54Q70EL1 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP54Q70EL1 AL136309.1-201ENST00000403917 691 ntBASIC20.7■□□□□ 0.9
USP54Q70EL1 HIST2H2BB-201ENST00000449108 381 ntBASIC20.7■□□□□ 0.9
USP54Q70EL1 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
USP54Q70EL1 CHMP4BP1-201ENST00000556017 588 ntBASIC20.7■□□□□ 0.9
USP54Q70EL1 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP54Q70EL1 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC20.7■□□□□ 0.9
USP54Q70EL1 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP54Q70EL1 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP54Q70EL1 PGR-209ENST00000617858 2816 ntTSL 5 BASIC20.7■□□□□ 0.9
USP54Q70EL1 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP54Q70EL1 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
USP54Q70EL1 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC20.69■□□□□ 0.9
USP54Q70EL1 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP54Q70EL1 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
USP54Q70EL1 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP54Q70EL1 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP54Q70EL1 CA12-203ENST00000422263 2556 ntTSL 2 BASIC20.69■□□□□ 0.9
USP54Q70EL1 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP54Q70EL1 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP54Q70EL1 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP54Q70EL1 BLK-205ENST00000529894 2017 ntTSL 5 BASIC20.69■□□□□ 0.9
USP54Q70EL1 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP54Q70EL1 RPL5P21-201ENST00000404620 815 ntBASIC20.69■□□□□ 0.9
USP54Q70EL1 KRTAP10-13P-201ENST00000412914 571 ntBASIC20.69■□□□□ 0.9
USP54Q70EL1 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP54Q70EL1 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP54Q70EL1 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC20.69■□□□□ 0.9
USP54Q70EL1 RNA5SP423-201ENST00000517127 109 ntBASIC20.69■□□□□ 0.9
USP54Q70EL1 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC20.69■□□□□ 0.9
USP54Q70EL1 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
USP54Q70EL1 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP54Q70EL1 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
USP54Q70EL1 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP54Q70EL1 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC20.69■□□□□ 0.9
USP54Q70EL1 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP54Q70EL1 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
USP54Q70EL1 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP54Q70EL1 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP54Q70EL1 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP54Q70EL1 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP54Q70EL1 SDCCAG3P2-201ENST00000326105 1023 ntBASIC20.68■□□□□ 0.9
USP54Q70EL1 RN7SKP175-201ENST00000408472 289 ntBASIC20.68■□□□□ 0.9
USP54Q70EL1 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC20.68■□□□□ 0.9
USP54Q70EL1 PARP8-218ENST00000513738 596 ntTSL 4 BASIC20.68■□□□□ 0.9
USP54Q70EL1 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC20.68■□□□□ 0.9
USP54Q70EL1 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC20.68■□□□□ 0.9
USP54Q70EL1 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC20.68■□□□□ 0.9
USP54Q70EL1 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms