Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNE3Q6ZMZ3 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SYNE3Q6ZMZ3 BNIP3P1-202ENST00000550043 1585 ntBASIC18.81■□□□□ 0.6
SYNE3Q6ZMZ3 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SYNE3Q6ZMZ3 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 LTF-203ENST00000426532 2494 ntTSL 2 BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 RBM39-205ENST00000397370 612 ntTSL 2 BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 METTL21AP1-201ENST00000438852 635 ntBASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SYNE3Q6ZMZ3 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 AL139384.1-201ENST00000612143 3047 ntBASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 GRAMD4P3-201ENST00000621665 1669 ntBASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 TUBB3P1-201ENST00000405796 1332 ntBASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 SLBP-205ENST00000488267 987 ntTSL 2 BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 CCDC74BP1-201ENST00000508880 1123 ntBASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 AP003680.1-201ENST00000598970 3660 ntBASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SYNE3Q6ZMZ3 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 ELP6-209ENST00000446787 894 ntTSL 3 BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 AC067863.1-201ENST00000494933 530 ntBASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms