Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH1Q08174 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
PCDH1Q08174 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH1Q08174 AL035456.1-201ENST00000456064 1369 ntBASIC15.39■□□□□ 0.05
PCDH1Q08174 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH1Q08174 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH1Q08174 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH1Q08174 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.39■□□□□ 0.05
PCDH1Q08174 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH1Q08174 WARS-232ENST00000556645 2508 ntTSL 5 BASIC15.39■□□□□ 0.05
PCDH1Q08174 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
PCDH1Q08174 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC15.39■□□□□ 0.05
PCDH1Q08174 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH1Q08174 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
PCDH1Q08174 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH1Q08174 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.39■□□□□ 0.05
PCDH1Q08174 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.39■□□□□ 0.05
PCDH1Q08174 AC211486.1-202ENST00000416371 468 ntBASIC15.39■□□□□ 0.05
PCDH1Q08174 AC136604.1-201ENST00000418535 575 ntBASIC15.39■□□□□ 0.05
PCDH1Q08174 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
PCDH1Q08174 AC023141.5-201ENST00000458585 616 ntBASIC15.39■□□□□ 0.05
PCDH1Q08174 AC211476.1-201ENST00000503899 468 ntBASIC15.39■□□□□ 0.05
PCDH1Q08174 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.39■□□□□ 0.05
PCDH1Q08174 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
PCDH1Q08174 AC026150.2-201ENST00000564693 1156 ntBASIC15.39■□□□□ 0.05
PCDH1Q08174 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.39■□□□□ 0.05
PCDH1Q08174 AC105021.1-202ENST00000570572 669 ntBASIC15.39■□□□□ 0.05
PCDH1Q08174 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH1Q08174 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.39■□□□□ 0.05
PCDH1Q08174 AC097359.3-201ENST00000603982 1210 ntBASIC15.39■□□□□ 0.05
PCDH1Q08174 AL133215.2-201ENST00000609242 977 ntBASIC15.39■□□□□ 0.05
PCDH1Q08174 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.39■□□□□ 0.05
PCDH1Q08174 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
PCDH1Q08174 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH1Q08174 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH1Q08174 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH1Q08174 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH1Q08174 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCDH1Q08174 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH1Q08174 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH1Q08174 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
PCDH1Q08174 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH1Q08174 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH1Q08174 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.38■□□□□ 0.05
PCDH1Q08174 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH1Q08174 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH1Q08174 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH1Q08174 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC15.38■□□□□ 0.05
PCDH1Q08174 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH1Q08174 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH1Q08174 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH1Q08174 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH1Q08174 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH1Q08174 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH1Q08174 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
PCDH1Q08174 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.38■□□□□ 0.05
PCDH1Q08174 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH1Q08174 RBPMS2P1-201ENST00000437762 623 ntBASIC15.38■□□□□ 0.05
PCDH1Q08174 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC15.38■□□□□ 0.05
PCDH1Q08174 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC15.38■□□□□ 0.05
PCDH1Q08174 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.38■□□□□ 0.05
PCDH1Q08174 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC15.38■□□□□ 0.05
PCDH1Q08174 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.38■□□□□ 0.05
PCDH1Q08174 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.38■□□□□ 0.05
PCDH1Q08174 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH1Q08174 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.38■□□□□ 0.05
PCDH1Q08174 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.38■□□□□ 0.05
PCDH1Q08174 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
PCDH1Q08174 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH1Q08174 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH1Q08174 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.38■□□□□ 0.05
PCDH1Q08174 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH1Q08174 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH1Q08174 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH1Q08174 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
PCDH1Q08174 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.38■□□□□ 0.05
PCDH1Q08174 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PCDH1Q08174 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH1Q08174 AC105250.1-201ENST00000509378 2057 ntBASIC15.37■□□□□ 0.05
PCDH1Q08174 AC132872.4-202ENST00000622924 2756 ntBASIC15.37■□□□□ 0.05
PCDH1Q08174 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH1Q08174 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH1Q08174 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH1Q08174 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
PCDH1Q08174 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH1Q08174 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC15.37■□□□□ 0.05
PCDH1Q08174 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH1Q08174 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
PCDH1Q08174 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH1Q08174 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH1Q08174 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.37■□□□□ 0.05
PCDH1Q08174 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH1Q08174 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.37■□□□□ 0.05
PCDH1Q08174 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.37■□□□□ 0.05
PCDH1Q08174 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH1Q08174 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH1Q08174 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PCDH1Q08174 HIST3H2BA-201ENST00000436555 524 ntBASIC15.37■□□□□ 0.05
PCDH1Q08174 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC15.37■□□□□ 0.05
PCDH1Q08174 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms