Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC9.59□□□□□ -0.87
HSPG2P98160 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
HSPG2P98160 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
HSPG2P98160 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
HSPG2P98160 ISCA2P1-201ENST00000425548 448 ntBASIC9.59□□□□□ -0.87
HSPG2P98160 FAM8A4P-201ENST00000435433 1213 ntBASIC9.59□□□□□ -0.87
HSPG2P98160 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC9.59□□□□□ -0.87
HSPG2P98160 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC9.59□□□□□ -0.87
HSPG2P98160 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC9.59□□□□□ -0.87
HSPG2P98160 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
HSPG2P98160 AC106820.3-201ENST00000561653 397 ntBASIC9.59□□□□□ -0.87
HSPG2P98160 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC9.59□□□□□ -0.87
HSPG2P98160 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC9.59□□□□□ -0.87
HSPG2P98160 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
HSPG2P98160 AMT-233ENST00000636522 1620 ntTSL 2 BASIC9.59□□□□□ -0.87
HSPG2P98160 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC9.59□□□□□ -0.87
HSPG2P98160 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC9.59□□□□□ -0.87
HSPG2P98160 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
HSPG2P98160 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC9.59□□□□□ -0.87
HSPG2P98160 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC9.59□□□□□ -0.87
HSPG2P98160 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
HSPG2P98160 HPGD-203ENST00000422112 805 ntTSL 2 BASIC9.59□□□□□ -0.87
HSPG2P98160 AL353637.1-201ENST00000451571 732 ntBASIC9.59□□□□□ -0.87
HSPG2P98160 AC009779.1-201ENST00000551138 283 ntBASIC9.59□□□□□ -0.87
HSPG2P98160 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC9.59□□□□□ -0.87
HSPG2P98160 AC009955.4-201ENST00000597192 544 ntBASIC9.59□□□□□ -0.87
HSPG2P98160 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
HSPG2P98160 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
HSPG2P98160 TBC1D3J-201ENST00000620719 1426 ntBASIC9.59□□□□□ -0.87
HSPG2P98160 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
HSPG2P98160 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
HSPG2P98160 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC9.59□□□□□ -0.87
HSPG2P98160 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC9.59□□□□□ -0.87
HSPG2P98160 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC9.59□□□□□ -0.87
HSPG2P98160 ANKRD30BP2-201ENST00000435744 1610 ntBASIC9.59□□□□□ -0.87
HSPG2P98160 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC9.59□□□□□ -0.87
HSPG2P98160 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
HSPG2P98160 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC9.59□□□□□ -0.88
HSPG2P98160 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC9.59□□□□□ -0.88
HSPG2P98160 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC9.58□□□□□ -0.88
HSPG2P98160 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC9.58□□□□□ -0.88
HSPG2P98160 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC9.58□□□□□ -0.88
HSPG2P98160 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC9.58□□□□□ -0.88
HSPG2P98160 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 IL9RP3-201ENST00000442856 1674 ntBASIC9.58□□□□□ -0.88
HSPG2P98160 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC9.58□□□□□ -0.88
HSPG2P98160 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC9.58□□□□□ -0.88
HSPG2P98160 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC9.58□□□□□ -0.88
HSPG2P98160 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC9.58□□□□□ -0.88
HSPG2P98160 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC9.58□□□□□ -0.88
HSPG2P98160 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC9.58□□□□□ -0.88
HSPG2P98160 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC9.58□□□□□ -0.88
HSPG2P98160 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC9.58□□□□□ -0.88
HSPG2P98160 AC005324.6-201ENST00000587972 613 ntBASIC9.58□□□□□ -0.88
HSPG2P98160 NAMA-206ENST00000605377 509 ntTSL 5 BASIC9.58□□□□□ -0.88
HSPG2P98160 AC009093.2-202ENST00000620513 2079 ntBASIC9.58□□□□□ -0.88
HSPG2P98160 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC9.58□□□□□ -0.88
HSPG2P98160 AC005052.1-201ENST00000625181 2492 ntBASIC9.58□□□□□ -0.88
HSPG2P98160 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC9.58□□□□□ -0.88
HSPG2P98160 KRT8P29-201ENST00000420409 1371 ntBASIC9.58□□□□□ -0.88
HSPG2P98160 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC9.58□□□□□ -0.88
HSPG2P98160 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC9.58□□□□□ -0.88
HSPG2P98160 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC9.58□□□□□ -0.88
HSPG2P98160 RN7SL67P-201ENST00000492147 296 ntBASIC9.58□□□□□ -0.88
HSPG2P98160 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC9.58□□□□□ -0.88
HSPG2P98160 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC9.58□□□□□ -0.88
HSPG2P98160 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC9.58□□□□□ -0.88
HSPG2P98160 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC9.58□□□□□ -0.88
HSPG2P98160 AC012073.1-201ENST00000606114 1108 ntBASIC9.58□□□□□ -0.88
HSPG2P98160 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC9.58□□□□□ -0.88
HSPG2P98160 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC9.58□□□□□ -0.88
HSPG2P98160 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC9.58□□□□□ -0.88
HSPG2P98160 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC9.58□□□□□ -0.88
HSPG2P98160 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC9.58□□□□□ -0.88
HSPG2P98160 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC9.58□□□□□ -0.88
HSPG2P98160 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC9.58□□□□□ -0.88
HSPG2P98160 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC9.58□□□□□ -0.88
HSPG2P98160 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC9.58□□□□□ -0.88
HSPG2P98160 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC9.58□□□□□ -0.88
HSPG2P98160 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC9.58□□□□□ -0.88
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms